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Re:Immunity Generated from Covid-19 Vaccines Differs from an... by bananabiscuit on Thursday August 26, 2021 @02:01PM (#28318305)
The spike protein targeting antibodies produced by the vaccine do indeed target a wider range of spike mutations than the spike protein antibodies from previous infection. However, vaccines only target spike protein, while a previous infection will cause your body to produce antibodies for a much larger set of targets on the virus, which in practice leads to a more robust immunity. This is supported by data from Israel and some recent studies.

https://www.israelnationalnews.com/News/News.aspx/309762

https://www.israelnationalnews.com/News/News.aspx/310963

https://www.medrxiv.org/content/10.1101/2021.08.24.21262415v...

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by oldgradstudent on Thursday August 26, 2021 @04:34PM (#28320328)
> However, vaccines only target spike protein, while a previous infection will cause your body to produce antibodies for a much larger set of targets on the virus, which in practice leads to a more robust immunity. This is supported by data from Israel and some recent studies

No, it does not.

The data from Israel only supports the claim that immunity from infection is longer lasting than from the vaccine, which should not have been a surprise to anyone.

It does not support any specific mechanistic explanation.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by rossdavidh on Thursday August 26, 2021 @04:53PM (#28320576)
From the last link: "Conclusions: This study demonstrated that natural immunity confers longer lasting and stronger protection against infection, symptomatic disease and hospitalization caused by the Delta variant of SARS-CoV-2, compared to the BNT162b2 two-dose vaccine-induced immunity. Individuals who were both previously infected with SARS-CoV-2 and given a single dose of the vaccine gained additional protection against the Delta variant."

Note the "longer lasting and stronger".

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by Godel_unicode on Thursday August 26, 2021 @06:10PM (#28321636)
GP is not disputing that. They're pointing out that we know this, but not why.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by __blockcipher__ on Thursday August 26, 2021 @08:04PM (#28322655)
It might seem small but they only said it was longer lasting, not that it was stronger:

> is longer lasting than from the vaccine

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by IgorPartola on Thursday August 26, 2021 @06:34PM (#28321901)
Hmm. This smells of literal survivor bias. The group that survives the delta variant is a smaller set than all who got infected while all vaccinated persons survived, even ones that wouldn’t have survived without the vaccine.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by rossdavidh on Thursday August 26, 2021 @09:29PM (#28323297)
I wasn't impressed by your point at first, but it occurs to me that the vaccination rate was way higher among older people, at least in the U.S. and probably in many countries. On the other hand, the rate of those who got covid-19 was higher among younger people. So, you may have a point there.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by dnautics on Thursday August 26, 2021 @06:51PM (#28322058)
While true, it's not by much; mortality for covid-19 is less than a percent of all hospitalizations, iirc.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by IgorPartola on Thursday August 26, 2021 @07:06PM (#28322160)
Right. The point of the vaccines is to not have to find out if you are in the 99% who survive Covid or the 1% who don’t.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by inter_netuser on Thursday August 26, 2021 @09:11PM (#28323179)
and if virus keeps mutating... twice-annual booster shots all over the earth?

I really hope we don't end up with a Marek's disease, but in humans.

https://en.wikipedia.org/wiki/Marek%27s_disease#Prevention

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by kbenson on Thursday August 26, 2021 @09:33PM (#28323326)
It seems more likely that after we've all developed some immunity to it and some variants, we'll have some level of resistance to what most strains bring to bear, and so milder and less lethal, like existing colds (also a coronavirus...) and flus.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by jacquesm on Thursday August 26, 2021 @07:48PM (#28322521)
You make it sound as if that's good news.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by IgorPartola on Friday August 27, 2021 @08:51AM (#28327156)
If this was missed in the design of the study, why would it be good news?
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by throwawayatwork on Thursday August 26, 2021 @09:13PM (#28323197)
That seems wildly optimistic.

In the UK, 2% of people who tested positive have died. In the US, 1.7% of people who tested positive have died.

The mortality rate among hospitalized people even higher.

[1] https://coronavirus.jhu.edu/data/mortality

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by rossdavidh on Thursday August 26, 2021 @09:28PM (#28323286)
That's about right for those who tested positive, but current CDC estimate is that for each one that tests positive, 3.3 others got it and never got tested. That makes the actual rate something like 0.38%. Which is a lot more than 0, and is even a lot more than a normal flu, but it's not 1.7%.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by jacquesm on Friday August 27, 2021 @04:58AM (#28325656)
Sure, but the CDC is mostly talking about the United States and the world is a lot larger than that. People are still dying all over the globe from this in fairly high numbers. And in the developing part of the world we don't even really know the numbers at all, we only do for those places that have a reasonable infrastructure and where healthcare did not completely collapse.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by caddybox on Friday August 27, 2021 @08:18AM (#28326844)
Developing countries will probably have a larger undercount so estimates derived from the US may already be projecting a more conservative figure.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by mynegation on Thursday August 26, 2021 @08:37PM (#28322932)
I do not think you remember it correctly. Cumulatively mortality is around 2% and sometimes higher of all known cases.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by lamontcg on Thursday August 26, 2021 @04:43PM (#28320447)
Honestly I have yet to see any convincing scientific evidence that is free from confounding factors which suggests that there is waning immunity.

And there's reason to believe from HCoV-229E that immunity against coronaviruses is actually durable and that reinfection is due to mutation and immune escape.

https://journals.plos.org/plospathogens/article?id=10.1371/j...

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by baxtr on Thursday August 26, 2021 @06:30PM (#28321858)
Thank you. I don’t understand why more people won’t argue like you do. We have 4 endemic human CoVs. Why not learn from the experience we had there?
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by ManBlanket on Thursday August 26, 2021 @07:23PM (#28322321)
I get the impression anything we could learn which doesn't support a foregone hyperbolic conclusion gets vastly ignored by the media and misconstrued as fringe in the court of popular opinion. All of this started with panic-buying toilet paper and baker's yeast from the grocery stores. I'm not surprised despite a considerable majority of US citizens being vaccinated, all reporting is underscored by pandemic levels of fear and sensation. The general public will still hatefully rebuke any claim that among a significantly vaccinated population Covid-19 statistics are largely comparable to many other endemic diseases. We were told this whole time that it wasn't just another flu, but to a vaccinated person it is just another illness. You don't want to get the flu, you don't want to spread it around, but you don't let fear of it consume your everyday life. But here we are, front page circa 2021, a bunch of vaccinated adults obsessing over reinfection.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by nicoffeine on Thursday August 26, 2021 @09:50PM (#28323435)
Millions of people have died in less than two years, 650,000 where I live in the US. More specifically here in Florida, ICU capacity is at 93%, and cases/hospitalizations/deaths are at record highs for the entire duration of the pandemic. People are being turned away for cancer treatments because there is simply no room at the hospital. The peak of daily deaths and infections in our state is right now.

This is news because the flu doesn’t do that every year or any year since 1919. It’s news because it’s the deadliest pandemic in over a century, and the death rate in some areas is at its peak and climbing, despite higher vaccination rates then a typical flu season.

I cannot understand why denial of this information is so important to you, but if you continue to spread doubt about taking more precautions than the flu, people may listen to you and those people may die.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by ManBlanket on Wednesday September 01, 2021 @03:03PM (#28384226)
I don't deny any of this information, on the contrary I'm well aware of it. Average age 79, 99% of had a significant confounding illness. The vast majority of people who have died were already sick and living in a nursing home, literally waiting to die. Meanwhile in my state until March of last year deaths from child abuse, which has sky-rocketed at unprecedented rates world wide since the start of the pandemic, outstripped deaths from Covid. I don't understand why you and so many other are living in denial of that information. It's like you don't even care about the costs of your actions, just a the vague justification of the number of people who have died from covid. The fact is people are going to die no matter what you do about it, so not acknowledging these policies themselves have caused suffering, let alone seriously consider whether or not they were effective, is a more egregious sleight than not doing anything at all. 5 years from now people are going to look back at humanity's reaction to Covid and say, "wow, that was astonishingly stupid."
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by derkster on Friday August 27, 2021 @04:23AM (#28325510)
COVID-19 just recently surpassed the number of war casualties from World War I forward.

625K war casualties[1] < 635K COVID-19 casualties[2]

[1]: https://en.wikipedia.org/wiki/United_States_military_casualt... [2]: https://www.nytimes.com/interactive/2021/us/covid-cases.html

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by aceazzameen on Thursday August 26, 2021 @10:09PM (#28323563)
Exactly. Modern day healthcare is keeping most Covid patients alive. But the disease is also putting a strain on modern day healthcare more than anything else ever has.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by lamontcg on Friday August 27, 2021 @12:53AM (#28324429)
Note that I actually agree more with you two about the overall impact of the pandemic and the collapse of the hospital system, not with ManBlanket up there.

I'm coming at this more from the perspective that the panic over delta being something straight out of a Big Bad TV Trope that breaks all the previous rules, is that it completely undermines the effectiveness of the vaccination campaign. The current best antivaxxer argument right now is just that all the headlines show that the vaccines don't work. I'm pushing back against that. It still looks to me like nobody has given me any indications the vaccines don't work. I think their VE against delta has been dramatically understated, the waning immunity has not been proven, and their efficacy against transmission is probably a lot higher than currently assumed.

At some point in the future I'll agree with the perspective that we need to start treating this more like the flu, but if the hospital systems are falling over we aren't there yet.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by fspeech on Thursday August 26, 2021 @08:05PM (#28322660)
There may be no scientific reason but it would make focusing on mRNA vaccine exclusively look like a strategic mistake. The driving factor behind the approach is the belief that the encoded domain is essential to virulence. Immune escape from mutation would imply failure of that reasoning. Unfortunately other approaches that focus exlusively on a segment of the S protein would face the same challenges.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by lamontcg on Thursday August 26, 2021 @09:17PM (#28323221)
You're thinking in absolutes, and there very likely will be immune escape eventually against the mRNA vaccines, and that is pretty much expected.

But that doesn't mean the mRNA vaccines would be failures.

Focusing on the spike was also done because mRNA vaccines against the nucleocapsid protein of SARS-CoV-1 showed evidence of ADE in animals models so nobody wanted to go down that road. That decision to run with the spike protein is very unlikely to be shown to ever be a mistake in hindsight and will have been the right choice (and certainly the right choice given the information at the right time and a decision which produced an entirely successful vaccine).

It is also a really pretty safe bet that this virus will evolve to achieve immune escape just like HCoV-229E does and will start reinfecting everyone again. That won't make this vaccine a failure. And that's a good thing since its more likely that forcing it to evolve to achieve immune escape will force it to made tradeoffs between immune escape and transmissibility/virulence/fitness.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by criticaltinker on Thursday August 26, 2021 @04:55PM (#28320603)
> It does not support any specific mechanistic explanation.

You're right that the recent pre-print cited by GP - regarding the data out of Israel - does not prove or disprove any specific mechanistic explanation.

However, interpreting GPs comment charitably, that study does support the notion that immunity acquired through natural infection may be more robust to mutations and variants - the mechanisms of which have been articulated in a variety of other literature. See my sibling comment [1] for supporting citations and excerpts.

[1] https://news.ycombinator.com/item?id=28320340

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by phkahler on Thursday August 26, 2021 @07:18PM (#28322264)
>> No, it does not.

But is is acknowledged in the article linked here:

>> Specifically, antibodies elicited by the mRNA vaccine were more focused to the RBD compared to antibodies elicited by an infection, which more often targeted other portions of the spike protein. Importantly, the vaccine-elicited antibodies targeted a broader range of places on the RBD than those elicited by natural infection.

It does not follow that vaccination conveys better immunity than previous infection. Only better response to mutations in one area of the spike protein. Nothing else is being claimed in this paper.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by buu700 on Thursday August 26, 2021 @05:59PM (#28321487)
which should not have been a surprise to anyone

Why is that? I have no background in immunology so it's mildly surprising to me.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by lupire on Thursday August 26, 2021 @06:04PM (#28321552)
The vaccine is a basically partial copy of the virus, so it stands to reason that the virus would be more dangerous as well as trigger a broader immune response.

But now we're back to speculation about mechanism, which GP was opposed to.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by geoduck14 on Thursday August 26, 2021 @08:57PM (#28323068)
>The data from Israel only supports the claim that immunity from infection is longer lasting than from the vaccine, which should not have been a surprise to anyone.

I find that surprising. Why did you expect that? Why should I have expected that?

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by snet0 on Thursday August 26, 2021 @10:05PM (#28323533)
The vaccine is effectively a small part of the virus, for the immune system to learn to recognise. The virus itself has many parts for which an immune response can be developed.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by georgeplusplus on Friday August 27, 2021 @12:06AM (#28324189)
>>>> The data from Israel only supports the claim that immunity from infection is longer lasting than from the vaccine, which should not have been a surprise to anyone.

Apparently it is a surprise for USA and Europe as the former only recognize infection based immunity for three months and the latter recognizes it for 6 months, while some EU member states recognize vaccine based immunity for 8 months.

please do not make stuff up to fit your narrative.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by mindfulplay on Thursday August 26, 2021 @07:42PM (#28322468)
The vaccines also lack a specific abnormal side effect that the infection may carry: risk of death and hospitalization.

Now with death, one could argue that it does provide much longer lasting immunity....

Seriously though, for most people the severity of infection-derived immunity is preconditioned upon them surviving the disease so this looks like the classic "planes with bullet holes" image?

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by __blockcipher__ on Thursday August 26, 2021 @08:06PM (#28322661)
> The vaccines also lack a specific abnormal side effect that the infection may carry: risk of death and hospitalization.

This is well-intentioned but false. The vaccines can send you to the hospital (side-effects). It's rare but happens. Similarly, you can be vaccinated, get infected with SARS-2, and end up in the hospital, so it's not even true that they avoid hospitalization from SARS-2 itself completely. (They help a lot with hosp/death from the virus, to be clear)

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by mindfulplay on Thursday August 26, 2021 @09:33PM (#28323328)
The risk associated with the vaccine (and the magnitude) are orders of magnitude lower than that of natural infection-based immunity.

The vaccine can almost certainly send a few people to the hospital in the same manner that an airbag could almost certainly cause injuries during an accident.

It's very different from a natural infectionimo.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by bsaul on Friday August 27, 2021 @04:11AM (#28325431)
"the risk associated.... immunity "

I know that it's a very unpopular opinion, but i'd say your statement is unfortunately still not 100% proven for every individual. A healthy 20 yo has "almost" 0 chance of having bad outcome from the covid. He also has "almost" zero chance of doing a hearth infection from RNA vaccines, and we have no idea about the long term consequences of both virus and vaccines, since both are only a few years old.

Making definitive statements in this context is hard.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by derkster on Friday August 27, 2021 @04:45AM (#28325604)
Talking about these issues at the individual level when it should talked about in broader terms distorts the reality of the situation. If you try to convince "no-risk" individuals that they should get the vaccine for their own health, you're not going to get very far.

But explaining to that same 20 year old that he might unintentionally bring COVID home from college and proceed to unintentionally infect high-risk parents or grandparents? That's where the real damage would comes from.

The peace of mind knowing I'm not going to unintentionally kill off members of my family is priceless.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by bsaul on Friday August 27, 2021 @05:01AM (#28325669)
I'm really glad you bring this argument, because it seems to me as it would be indeed the only "real" reason to have young people vaccinated..

Unfortunately, the recent news on that front don't bring much hope. Vaccinated people can be infected, and transmit the virus to elderly people (the rate at which they do being currently debated among specialist, some claiming it is much less, other claiming it is just as much as non-vaccinated asymptomatic people).

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by derkster on Friday August 27, 2021 @05:12AM (#28325715)
I would like to think that getting vaccinated helped reduce viral load enough to help limit potential mutations to some degree, but who knows.

I do know I need to be able to live with myself, and if I accidentally hurt someone I loved due to being careless in the face of a real threat - it would tear me up. I'm sure others feel the same, and I hope people can keep it up through the fatigue. :)

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by bsaul on Friday August 27, 2021 @07:45AM (#28326574)
yeah, it seems like if you're ever visiting an old relative, the better option seems to still be to get tested right before, vaccinated or not.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by fspeech on Thursday August 26, 2021 @07:48PM (#28322524)
Not with inactivated virus. There are vaccines based on that.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by robbiep on Thursday August 26, 2021 @08:06PM (#28322666)
… did you just respond to a statement about the reduction in morbidity and mortality from vaccines compared to infection with the virus… with a statement that says ‘use a vaccine?’
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by fspeech on Thursday August 26, 2021 @08:21PM (#28322782)
Opening argument was about robustness of immune response from exposure to the whole virus. GP implied infection was the only way to be exposed to the whole virus. I pointed out such exposure can also be achieved through inactivated virus.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by Ajedi32 on Thursday August 26, 2021 @02:25PM (#28318637)
I was confused about that as well. The article suggests that targeting "other portions of the spike protein" (as immune systems previously infected with COVID do) results in the immune system being _less_ robust against variants of the virus than targeting "places on the RBD" (as immune systems exposed to Moderna's mRNA vaccine do):

> Specifically, antibodies elicited by the mRNA vaccine were more focused to the RBD compared to antibodies elicited by an infection, which more often targeted other portions of the spike protein. Importantly, the vaccine-elicited antibodies targeted a broader range of places on the RBD than those elicited by natural infection.

> These findings suggest that natural immunity and vaccine-generated immunity to SARS-CoV-2 will differ in how they recognize new viral variants. What’s more, antibodies acquired with the help of a vaccine may be more likely to target new SARS-CoV-2 variants potently, even when the variants carry new mutations in the RBD.

Anyone with more experience in immunology care to weigh in on why the second paragraph there follows from the first? Naively, one might expect targeting a wider variety of places on on the COVID spike protein to result in better immunity against variants, not worse. Why is the article saying the opposite?

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by rcxdude on Thursday August 26, 2021 @03:00PM (#28319072)
I think it's because the other parts of the virus are more likely to change over time, because there's lots of neutral mutations available: changes which don't affect fitness but do affect antibody response. The RBD by contrast is much more constrained: most mutations there result in a virus which can no longer infect cells, so it's much less likely to change (though of course any mutations which increase its effectiveness will be heavily selected for). This I think was one of the main reasons the spike protein was targeted by the mRNA viruses.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by rolph on Thursday August 26, 2021 @02:35PM (#28318767)
when you target many epitopes, you are shooting at the 10 inch ring; target one epitope of critical function [put one in center of mass] you are shooting the 2 inch ring.

immune systems dont look at everything at once, they find something that sticks and and over trials sharpen the response until highest efficacy of antibody epitope combination is found.

the vaccine is like a laser guided munition, natural immunity is like carpet cluster bombing; both highly effective but in different modalities.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by jyounker on Thursday August 26, 2021 @08:29PM (#28322862)
> Anyone with more experience in immunology care to weigh in on why the second paragraph there follows from the first? Naively, one might expect targeting a wider variety of places on on the COVID spike protein to result in better immunity against variants, not worse. Why is the article saying the opposite?

The RBD is the part of the spike protein that latches onto the cell. Specifically it latches onto the ACE2 receptor. If the RBD changes too much then the virus can no longer infect its target cells (because it can't attach to ACE2 receptors). This means that there are probably strong limits on how much this section of the virus can change.

Because we expect the RBD to change less than other areas, and because the mRNA vaccines recognize more of these possible changes, then we have a reasonable expectation that mRNA based immunity should continue to be effective.

To make a crude analogy, ACE2 is a phillips head screw. The spike protein is a phillips screw driver. The tip of the screw driver is the RDB. Infection elicited antibodies recognize random spots all over the screw driver. mRNA vaccine elicited antibodies recognized spots all over the tip. Eventually you can turn the handle into a shape that won't be recognized, but there are strict limits on how much you can change the tip while still having it function as a philips screw driver. And of the ways that you can change the tip, the mRNA antibodies will match more of them than the naturally acquired ones. At least that's the expectation.

There are still possible ways that the virus might evade; perhaps by making shields for the tip that block portions of the antibody, but this seems like it might be harder than changing the handle's shape.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by randcraw on Thursday August 26, 2021 @04:57PM (#28320634)
Inoculation with an mRNA vaccine provides recognition of few antigena (e.g. RBD). The size of the vaccine dosage and the delay of a month between doses is designed to create a strong recognition of the chosen antigens.

Infection's response to key antigens like RBD is inherently more limited because: 1) immunity creates antibodies and T cells that target a wider range of antigens, and 2) exposure to COVID antigens usually fades after 7-10 days, limiting the immune system's time to build further defenses.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by criticaltinker on Thursday August 26, 2021 @04:35PM (#28320340)
> Why is the article saying the opposite?

The cited study in OP may have a slightly pro-vaccine bias, potentially because two authors have "the potential to receive a share of IP revenue" on a relevant patent, and because one author consults for Moderna. Regardless, the study presents scientifically accurate findings, but in a few places it tries to stretch those into questionable conclusions. For example, the authors write:

> At first glance, the RBD targeting of the vaccine sera neutralization might seem likely to increase susceptibility to viral mutations, but the rest of our results suggest that this MAY not be the case. [4]

So keep that tilt in mind when reading it.

> one might expect targeting a wider variety of places on on the COVID spike protein to result in better immunity against variants

Yes this is good intuition, here are excerpts from other literature illustrating why targeting a wide variety of SARS-COV-2 proteins can provide better immunity. In fact, this reasoning is why ongoing vaccine research is investigating formulations beyond the current solely spike protein focused vaccines. Notably, one shortcoming of the current mRNA vaccine formulations is that they do not induce nucleocapsid (N) protein antibodies - whereas natural infection does.

> The nucleocapsid protein of SARS-CoV-2 has been suggested to be an important target for T cell responses. [1]

> Firstly, this protein contains conserved cross-reactive T cell epitopes that are present among different coronaviruses, suggesting that it could be an ideal target for universal coronavirus vaccines. [1]

> Secondly, the nucleocapsid protein is among the most abundant structural proteins in the coronavirus lifecycle, which may facilitate early antigen presentation and recognition by T cells. [1]

> Previous knowledge on other related coronaviruses and the prompt sequencing of the SARS-CoV-2 genome early in the pandemic allowed to identify the spike (S) and the nucleocapsid (N) structural proteins as major targets of antibodies. [2]

> The surface glycoprotein S, which contains the receptor-binding domain (RBD), has a better known function in immunity and is the leading antigen candidate for vaccine development. N is smaller than S, lacks a glycosylation site, and is extensively used in leading serodiagnostics kits due to its abundant expression during infection and early antibody response but its immunological relevance is less established. [2]

> N forms ribonucleoprotein complexes during the virion assembly process by binding to the viral RNA genome and packing it into long helical structures. Its main function is to regulate viral RNA transcription during replication, promoting the synthesis of its own proteins while interfering with the metabolism, protein translation, and proliferation of the infected host cell. During the process of infection, N dissociates itself from the genome and is exposed to the host immune system, and its high immunogenicity has also prompted its exploration as vaccine target. [2]

> Interestingly, significant protein similarity between SARS-CoV-1, SARS-CoV-2, and other HCoV has been reported for N, including a highly conserved motif in the N-terminal (NT) half of the protein (FYYLGTGP) and relevant immunodominant epitope regions. [2]

> Evidence from multiple experimental studies showing that single RBD point mutations can lead to resistance to neutralizing convalescent plasma from multiple donors suggests that specific single mutants may be able to evade spike-targeting vaccinal immunity in many individuals and rapidly lead to spread of vaccine-resistant SARS-CoV-2. [3]

[1] Combining spike- and nucleocapsid-based vaccines improves distal control of SARS-CoV-2 https://www.cell.com/cell-reports/pdf/S2211-1247(21)01108-6....

[2] Immunogenicity and crossreactivity of antibodies to the nucleocapsid protein of SARS-CoV-2: utility and limitations in seroprevalence and immunity studies https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7879156/

[3] Risk of rapid evolutionary escape from biomedical interventions targeting SARS-CoV-2 spike protein https://pubmed.ncbi.nlm.nih.gov/33909660/

[4] Antibodies elicited by mRNA-1273 vaccination bind more broadly to the receptor binding domain than do those from SARS-CoV-2 infection https://pubmed.ncbi.nlm.nih.gov/34103407/

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by walterbell on Thursday August 26, 2021 @05:59PM (#28321489)
Thanks for the detailed review. We need AI bots and media metadata to enable automated "supply chain analysis" of media and journal articles, including social network analytics of finance and other influence networks.

Such analytics are now beginning for software supply chains, thanks to a Presidential Executive Order. As warfare spreads from kinetic to cyber to psychological, we will need more tooling to keep pace with the analytical descendants of Cambridge Analytica. Social discourse can be mined in real time to identify high-leverage, transient gaps in narratives, to influence far-reaching real world policy.

Individual humans, parsing text for meaning, have an uphill journey.

TODO: create Streisand bot to extract downvoted comments from HN, differentiate between legitimate vs targeted downvotes, then republish to an audience for critical response on any valid points, i.e. use the infrastructure and human resources of would-be censors, to generate new signals.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by manwe150 on Friday August 27, 2021 @12:41AM (#28324370)
Particularly when even just with the comments here, someone else was mentioning that targeting the nucleocapsid had led to concerns of ADE in past animal tests, which makes it even more fascinating to try to connect all those bits.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by bena on Thursday August 26, 2021 @02:40PM (#28318830)
The way I read it is that vaccine immunity is engineered towards COVID in general. It'll catch variants because they're still COVID.

Natural immunity knows only of COVID-19 Alpha. But it knows it well. All those nooks and crannies the other variants may not have, the natural antibodies can latch on to.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by nradov on Thursday August 26, 2021 @02:22PM (#28318595)
That really depends on which vaccine. There are several inactivated virus vaccines such as Sinovac used in other countries which we would expect to produce antibodies for more than just the spike protein. However it's unclear whether those vaccines are more or less effective in practice.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by staticassertion on Thursday August 26, 2021 @05:28PM (#28321065)
Are there such vaccines available in the US? It seems like those would make for effective boosters.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by nradov on Thursday August 26, 2021 @05:38PM (#28321199)
There are no inactivated virus vaccines authorized in the US. I'm not aware of any research on the effectiveness of using such vaccines as boosters after other types of vaccines.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by staticassertion on Thursday August 26, 2021 @06:01PM (#28321520)
Thanks
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by deodorel on Friday August 27, 2021 @02:52AM (#28325049)
Valneva has an inactivated virus vaccine and they will soon apply for authorisation (phase 3 i think right now)
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by Gibbon1 on Thursday August 26, 2021 @03:46PM (#28319666)
I think on a personal basis all of them are better than nothing. It's like advice about taking the first bus out of town.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by tylerhou on Thursday August 26, 2021 @05:06PM (#28320783)
As other commentators have noted, it's quite a leap in logic to use reinfection data to make a mechanistic claim on how natural infection may or may not improve the immune response compared to vaccination.

In addition, the naturally-infected and vaccine populations are not the same. For example, having a bad experience with a natural infection of Covid may cause people to not participate as much in virus-risky behavior. On the other hand, people who seek out vaccinations may have done so for business or personal reasons that make them more prone to expose themselves to the virus. It is also possible that (re)infection for the two groups are not monitored at the same rate. Without controlling for these factors (which your first link does not) you cannot make any judgement about which immunity is stronger from your cited data.

Lastly, your second link and your last link directly contradict each other — the second link claims "Recovered COVID patients don't benefit from vaccine" but your last link says "Individuals who were both previously infected with SARS-CoV-2 and given a single dose of the vaccine gained additional protection...." If you're going to cite sources, they should probably have a consistent message :).

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by bananabiscuit on Thursday August 26, 2021 @05:57PM (#28321469)
That mechanism of action is just what I’ve seen put forth by immunologists commenting on the these kinds of results.

While the author’s opinions on the necessity of vaccines do differ, they do agree on my main point: that empirically, natural immunity is indeed robust and tentatively even better than vaccine acquired immunity.

It looks like getting a vaccine helps boost immunity in all cases, whether you had a previous infection or if you had 2 doses and I would bet even after the booster, each additional shot will continue to provide some marginal benefit. So keep getting jabs, I guess, or you’re killing grandma.

I think at this point throwing in “you should vaccinate (regardless of your individual circumstance)” into your conclusion, even if it’s a complete non-sequitor, is a hedge against losing your job/funding/respect of your equally frightened peers. The COVID research equivalent of the “making the world a better place” SV trope.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by jyounker on Thursday August 26, 2021 @08:41PM (#28322970)
To acquire immunity naturally you have to get sick.

In oder to acquire that immunity you have a 1% chance of dying, 2% chance of ending up in the hospital on a ventilator for a month, and a 20% chance of long haul covid.

To acquire immunity from a vaccine you have a 0.001% chance of an allergic reaction.

Which risk do you choose?

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by bananabiscuit on Thursday August 26, 2021 @08:49PM (#28323026)
Sorry. I never said and never even meant to imply that you should try to get sick instead of getting the vaccine. Only that if you were already sick, that it greatly shifts your own risk/benefit profile in the direction of not getting the vaccine.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by manwe150 on Friday August 27, 2021 @12:47AM (#28324402)
Currently, I think the numbers for a person in that case are then 1% chance of getting COVID again naturally vs vaccine’s 0.001% chance of allergic reaction and a reduced chance of getting COVID again of 0.5%. (Using very round numbers)

Which risk do you choose?

Source: https://www.cdc.gov/mmwr/volumes/70/wr/mm7032e1.htm

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by bananabiscuit on Friday August 27, 2021 @07:40AM (#28326520)
I’ll personally take the risk of being reinfected with COVID.

Either way, at a <= 1% risk of re-infection, I’m no longer a real liability to society so please just leave it for me to decide and don’t force me undergo any unnecessary medical procedures.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by FooBarWidget on Thursday August 26, 2021 @03:45PM (#28319652)
What about inactivated vaccines such as Sinovac? Does that immune response resemble natural infection?

Does this mean inacticated vaccines work better against variants?

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by pier25 on Thursday August 26, 2021 @04:21PM (#28320145)
Another consequence of this is that, theoretically, the virus could mutate and be unrecognizable by the antibodies produced by the vaccine.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by BurningFrog on Thursday August 26, 2021 @04:29PM (#28320242)
One reason the vaccines target the spike protein is that it's how the virus breaks into human cells.

It it mutates to a different spike shape, it's very unlikely that it will keep that breakin power.

Or at least that is the assumption :)

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by trhway on Thursday August 26, 2021 @05:12PM (#28320844)
and given that vaccines target only a segment and pretty much the same segment, such mutation based escape from all of the vaccines at the same time is of very high probability - https://journals.plos.org/plosone/article?id=10.1371/journal... . And the fact that the current vaccines don't prevent delta infection seems to confirm it. Whereis natural immunity targets multitude of the segments (and not only of the spike protein) thus naturally providing much more robust immunity.

We need a vaccine for delta. Unfortunately from MBA perspective it is much more profitable to push the current vaccines down the throat of the populace through forced mandates and hysteric propaganda instead of investing additional billions in the vaccine for the mutated virus.

2 shots don't work, thus the 3rd, "booster", then what? the 4th? It is pretty typical for the medical industrial complex to push to sell more and more product in response to low effect, like that opioid dosage increase.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by stillbourne on Thursday August 26, 2021 @04:28PM (#28320228)
The same could be said for convalescent immunity too.
Re:Immunity Generated from Covid-19 Vaccines Differs from an... by bsder on Thursday August 26, 2021 @05:41PM (#28321226)
> while a previous infection will cause your body to produce antibodies for a much larger set of targets on the virus, which in practice leads to a more robust immunity.

That is simply not a statement you can make without supporting evidence.

Your immune systems binds to irrelevant targets all the time. People normally got measles once, but lots of people got it multiple times.

It is entirely possible that your immune system will bind to something that mutates rapidly and have worse response than the vaccine.

As someone who got the Covid19 in Original Flavor(tm), I still went and got the vaccine. I don't want to be one of the unlucky ones whose immune system didn't flag the spike protein for destruction.

Re:Immunity Generated from Covid-19 Vaccines Differs from an... by walterbell on Thursday August 26, 2021 @06:47PM (#28322032)
> People normally got measles once, but lots of people got it multiple times

Is there a good reference for the percentage of people who did?