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Re:There’s no such thing as a tree (phylogenetically) by yesenadam on Tuesday December 21, 2021 @12:18AM (#29634181)
Well, I thought this was a fascinating and well-written article.

p.s. I learnt not long ago that there's no such 'thing' as an antelope:

"The term antelope is used to refer to many species of even-toed ruminant that are indigenous to various regions in Africa and Eurasia. Antelope comprise a wastebasket taxon (miscellaneous group) within the family Bovidae, encompassing all Old World ruminants that are not bovines, caprines, deer, or giraffes."

https://en.wikipedia.org/wiki/Antelope

Re:There’s no such thing as a tree (phylogenetically) by ajuc on Tuesday December 21, 2021 @04:34AM (#29635631)
Biology is what happens when you try to decompile code written in assembler into OO language.
Re:There’s no such thing as a tree (phylogenetically) by rightbyte on Tuesday December 21, 2021 @05:40AM (#29636024)
And when the systematics guys started out they did not even know the assembler code existed for like 200-300 years.
Re:There’s no such thing as a tree (phylogenetically) by kelseyfrog on Tuesday December 21, 2021 @02:27PM (#29641069)
They just classified by UI.
Re:There’s no such thing as a tree (phylogenetically) by pfdietz on Tuesday December 21, 2021 @07:37AM (#29636775)
Clade computing.
Re:There’s no such thing as a tree (phylogenetically) by agumonkey on Tuesday December 21, 2021 @11:52AM (#29639230)
And publish a uml diagram of species
Re:There’s no such thing as a tree (phylogenetically) by aitchnyu on Wednesday December 22, 2021 @02:17AM (#29646387)
Where a cat is a table extended with a .meow()
Re:There’s no such thing as a tree (phylogenetically) by ialyos on Tuesday December 21, 2021 @10:17AM (#29638145)
This comment is underrated
Re:There’s no such thing as a tree (phylogenetically) by medstrom on Tuesday December 21, 2021 @05:36AM (#29635992)
Also, you're a fish. When people talk about fish, they mean "fish that aren't tetrapods", because cladistically speaking, tetrapods (birds, reptiles, mammals) are fish too.
Re:There’s no such thing as a tree (phylogenetically) by derbOac on Tuesday December 21, 2021 @08:40AM (#29637250)
... except when people talk about fish, they mean "gnathostomata that aren't tetrapodomorpha".

It's still cladistically meaningful to a very informative extent.

Re:There’s no such thing as a tree (phylogenetically) by btilly on Tuesday December 21, 2021 @10:58AM (#29638597)
And yet, we usually count hagfish as fish.
Re:There’s no such thing as a tree (phylogenetically) by lproven on Tuesday December 21, 2021 @05:39AM (#29636018)
I dispute that. Speaking as a vegetarian, I think the key problem is that a lot of people don't know WTF a fish is.

Q: Do you know what's the best gift to give a vegetarian who eats fish?

A: A dictionary.

Re:There’s no such thing as a tree (phylogenetically) by medstrom on Tuesday December 21, 2021 @06:29AM (#29636322)
I don't see how the culinary definition of fish is related to cladistics.

Even if they were, I don't see what you dispute, because they agree on this point; if "vegetarian" means "avoid meat" and "meat" means "flesh of animal", then vegetarian also means to avoid fish. Come to think of it, eggs would also be included in that definition.

Re:There’s no such thing as a tree (phylogenetically) by abrowne on Tuesday December 21, 2021 @07:52AM (#29636872)
A lot of Indian religious vegetarians don't eat eggs. E.g. https://www.nytimes.com/2021/12/13/world/asia/india-eggs-hin...
Re:There’s no such thing as a tree (phylogenetically) by lproven on Wednesday December 22, 2021 @07:02AM (#29648173)
So from this I can tell that you're not one. Also, that you didn't get the joke.

I have been ovo-lacto-vegetarian for about 40 years now. So many self-identified "vegetarians" think that fish is vegetarian that many many restaurants etc. offer fish-based dishes as "vegetarian". I have frequently had to go totally without food because there was nothing available for me, because all the "vegetarian" options contained fish.

This is an extremely widespread issue, which you've never noticed. That's why you don't understand the relevance.

As for cladistics, again, this is very simple: look at the number of different types of animal that are called "fish".

. Shellfish (which includes crustaceans, i.e. arthropods, bivalve and gastropod molluscs)

. Hagfish (and lampreys)

. Starfish

. Jellyfish

Even going by simpler understandings: chondrichthyes and osteichthyes are both, to the general public, just "fish" with no particular distinction between these wildly different clades.

And this still overlaps with dietary restrictions. Kosher food excludes crustaceans but permits fish with fins _and_ scales, with a loose definition of both.

The public understanding of "fish" is a perfect example of the non-overlapping nature of the general understanding of groups of animals and plants, and the scientific one. The public understanding bears little more relationship to reality than Borges' classification in "The Analytical Language of John Wilkins" –

« animals are divided into:

those that belong to the Emperor, embalmed ones, those that are trained, suckling pigs, mermaids, fabulous ones, stray dogs, those included in the present classification, those that tremble as if they were mad, innumerable ones, those drawn with a very fine camelhair brush, others, those that have just broken a flower vase, those that from a long way off look like flies. »

https://multicians.org/thvv/borges-animals.html

Re:There’s no such thing as a tree (phylogenetically) by zem on Wednesday December 22, 2021 @09:36AM (#29649878)
'shellfish', 'jellyfish' and 'starfish' are not commonly considered fishes, despite the name.
Re:There’s no such thing as a tree (phylogenetically) by lproven on Wednesday December 22, 2021 @09:44AM (#29649973)
You might be surprised.

I have been. For instance, I was served trepang in a Chinese restaurant once. I asked what it was -- I wasn't veggie yet in those days, I was still just a kid. They told me it was a fish.

No Google in those days, so I had to go to the library and look through books, which told me it was a sea-slug. It's not.

https://en.wikipedia.org/wiki/Sea_cucumber_as_food

Re:There’s no such thing as a tree (phylogenetically) by williamdclt on Tuesday December 21, 2021 @07:11AM (#29636602)
I don't think eggs are the flesh of an animal? That would seem to stretch the definition of "flesh" quite a bit, wouldn't it?
Re:There’s no such thing as a tree (phylogenetically) by HPsquared on Tuesday December 21, 2021 @07:22AM (#29636663)
It's an animal cell, I suppose.
Re:There’s no such thing as a tree (phylogenetically) by lproven on Wednesday December 22, 2021 @07:10AM (#29648218)
It is of course an animal cell and demonstrates well the issues.

Hens lay eggs without copulation. These eggs are sterile: they cannot develop into an embryo and thus another hen. So, to some vegetarians, they are acceptable. They are non-viable.

But hens reared in the presence of a cockerel may well be fertilised, and thus viable, and thus not acceptable for very strict ovo-lacto-vegetarians.

Ducks, quails, and some other farmed birds, do not generally lay eggs unless they have copulated, and so their eggs are often not considered suitable for vegetarians.

Birds' eggs can be collected without harm or suffering to the animal; so, some vegetarians considera that fine.

But eggs of any type are quite definitely an animal product and so not edible by vegans, whether viable or not, fertilised or not.

Fish eggs are never suitable for vegetarians, because collecting them means killing the animal. This is a simple and obvious distinction but one that is not apparent to most non-vegetarians. So, no caviar, no fish roe, etc.

For the very strict, that also means not consuming a lot of beer, because it is fined with isinglass, a byproduct of killing fish. However, I know vegans who drink beer.

It is a lot more complicated than it appears to outsiders.

Re:There’s no such thing as a tree (phylogenetically) by airstrike on Tuesday December 21, 2021 @11:24AM (#29638886)
potential flesh?
Re:There’s no such thing as a tree (phylogenetically) by Zababa on Tuesday December 21, 2021 @04:58AM (#29635773)
A good reminder that the map is not the territory. Lately I've started to see more and more "categories" in general as a very human construct, probably made to save on processing power when thinking about things. Reality is hard and very complex and you can't be thinking about all the details all the time.
Re:There’s no such thing as a tree (phylogenetically) by HPsquared on Tuesday December 21, 2021 @07:23AM (#29636682)
"The Treachery of Images"

"The famous pipe. How people reproached me for it! And yet, could you stuff my pipe? No, it's just a representation, is it not? So if I had written on my picture "This is a pipe", I'd have been lying!

— René Magritte"

https://en.m.wikipedia.org/wiki/The_Treachery_of_Images

Re:There’s no such thing as a tree (phylogenetically) by jacquesm on Tuesday December 21, 2021 @05:26AM (#29635925)
Categories are an optimization. It is also a leaky abstraction and there are a large number of errors in our thinking due to this optimization, which is often premature.
Re:There’s no such thing as a tree (phylogenetically) by Zababa on Tuesday December 21, 2021 @06:01AM (#29636161)
I'm not sure that it's premature. We use categories all the time, the time when they fail us seem to be rare in proportion.
Re:There’s no such thing as a tree (phylogenetically) by dsr_ on Tuesday December 21, 2021 @07:49AM (#29636858)
Rare but often important.

We all work with computers all the time, and so we have a tendency to try to represent the universe in the simplest abstractions that capture the necessary detail for the project we are currently contemplating. When those abstractions fail to capture a necessary detail, it can be due to:

- a bad abstraction in the first place

- a new use for the representation that we hadn't thought about

- insufficient understanding of what we are trying to represent

I have seen all three of these situations repeatedly. They are all quite common.

Re:There’s no such thing as a tree (phylogenetically) by Areibman on Tuesday December 21, 2021 @01:54AM (#29634731)
The term for these sorts of categories is called "Wastebin Taxon"
Re:There’s no such thing as a tree (phylogenetically) by DarylZero on Tuesday December 21, 2021 @09:07AM (#29637484)
Re:There’s no such thing as a tree (phylogenetically) by t786342723 on Tuesday December 21, 2021 @04:08AM (#29635478)
The posh word is "polyphyletic"
Re:There’s no such thing as a tree (phylogenetically) by yesenadam on Tuesday December 21, 2021 @02:05AM (#29634799)
That's pretty much a worse than pointless comment, isn't it, without some reason/justification supporting it. The wiki page for the term in question begins "Wastebasket taxon (also called a wastebin taxon, dustbin taxon or catch-all taxon)", so it does seem there's no one correct term.
Re:There’s no such thing as a tree (phylogenetically) by Rebelgecko on Tuesday December 21, 2021 @02:43AM (#29634991)
What's the difference between a ruminant and an ungulate?
Re:There’s no such thing as a tree (phylogenetically) by Groxx on Tuesday December 21, 2021 @03:13AM (#29635146)
Broadly speaking: a ruminant is a subset of ungulates. Well, technically too.

Ungulates have hooves (horses, pigs, camels, cows, etc). Ruminants are ungulates that eat grasses in a somewhat unique way, by partially fermenting it in their gut, and horking it back up for another good chew or three (cows, giraffes, deer, antelopes, etc).

And I say "broadly" and "somewhat" because, to intentionally misrepresent the article's title, there's no such thing as a tree (of ancestry/relationships). Camels also ferment food in their gut but aren't ruminants, as do (I assume) other kinds of animals. There are a lot of parallel evolutions, genetic crossovers, and general muddying with any kind of attempted high-level grouping of creatures.

Did you know ungulates include whales, for instance? You know, those hoofed, herbivorous aquatic mammals that people are so fond of. But not seahorses. https://en.wikipedia.org/wiki/Ungulate

Taxonomies are weird. And it only gets weirder as we dig into them more and more, and keep making adjustments and corrections.

Re:There’s no such thing as a tree (phylogenetically) by jwdunne on Tuesday December 21, 2021 @05:03AM (#29635796)
And killer whales. Big, carnivorous and hooved with lots of teeth. Those are ungulates too.

Interestingly enough, Judaism uses rumination, in part, to determine whether an animal is okay to eat. It was called “chewing their cud”.

Pigs don’t do this and that’s why they’re not kosher.

I suspect this was the inspiration for pork being haram in Islam but it’s explicitly prohibited by name, rather than by property.

I’m not Jewish or by any means religious but I got curious one day and that’s how I learned what ruminants were (and even toed ungulates from the split hooves rule).

EDIT: clarity on comment regarding cetaceans as ungulates

Re:There’s no such thing as a tree (phylogenetically) by jacquesm on Tuesday December 21, 2021 @05:32AM (#29635973)
> And killer whales.

Is that true? The wikipedia page on Ruminants shows the Cetacea outside of the group labeled Ruminants.

https://en.wikipedia.org/wiki/Ruminant

Re:There’s no such thing as a tree (phylogenetically) by jwdunne on Tuesday December 21, 2021 @06:22AM (#29636290)
Ah, I meant they’re cetaceans and therefore ungulates, albeit non-herbivorous. Should have made that clearer, sorry!
Re:There’s no such thing as a tree (phylogenetically) by ZeroGravitas on Tuesday December 21, 2021 @03:04AM (#29635093)
Grass eating Vs hooves.