News for hackers. Stuff that matters.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by ttul on Sunday February 26, 2023 @09:16AM (#34945695)
The This Week In Virology podcast has been talking about the lab leak concept since the early days of the pandemic, with various experts opining on the likelihood. In [1], the expert discusses how the virus itself does not seem engineered; it’s most likely a naturally created virus.

However, this is exactly the sort of virus that they study at the BSL4 lab in Wuhan, quite legitimately - and they produce good science from this work. But because this is China, if a lab accident happened, it won’t be getting reported in the media. It’s a state secret.

The Energy Department gave a low probability to their assessment, but this is still a bombshell. Imagine the legal liability for China in international courts if the evidence is solid enough for litigation.

1. https://www.microbe.tv/twiv/tag/lab-leak-hypothesis/

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by tiahura on Sunday February 26, 2023 @09:23AM (#34945751)
they produce good science from this work.

Other than securing more funding for more research, and trivia for virologists, what good science has come from this lab?

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by ttul on Sunday February 26, 2023 @09:31AM (#34945811)
I’d have to re-listen to numerous TWiV podcasts, but here is a WaPo article discussing the quality of research at WIV: https://archive.ph/2020.01.31-185716/https://www.washingtonp...

The Wuhan institute was celebrated as an improvement over the facilities at which dangerous viruses had previously been studied in China. The 2004 SARS outbreak originated in a lab: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC416634/

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by fidgewidge on Sunday February 26, 2023 @10:42AM (#34946351)
That WaPo article isn't about the quality of research at the WIV, it's an attempted (failed) debunking of the "fringe theory" that SARS-CoV-2 escaped from a lab. It has nothing to say on what good science they produced, perhaps because there wasn't any. Virology appears to spend its time fiddling with viruses based on the claim that doing so will help create vaccines, except, their work doesn't seem to have contributed to any vaccine development.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by j_crick on Sunday February 26, 2023 @10:54AM (#34946446)
> their work doesn't seem to have contributed to any vaccine development.

On the contrary, look at covid aftermath — it quite did! /s

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by fidgewidge on Sunday February 26, 2023 @03:20PM (#34948955)
Touché!
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by cld8483 on Sunday February 26, 2023 @01:18PM (#34947830)
> Virology appears to spend its time fiddling with viruses based on the claim that doing so will help create vaccines, except, their work doesn't seem to have contributed to any vaccine development.

Because this work is "dual-use", the civil/medical justification is just a fig leaf to cover up biological weapon development. Such research has never helped the development of medical treatments, and was never truly meant to. Covid was likely a 'strategic' weapon designed to disadvantage free democratic countries, giving an advantage to authoritarian governments which in principle were able to institute draconian controls to limit the damage of covid. It didn't quite work out that way, but those who think a biological weapon must necessarily have a limited geographic effect are being naive. The Americans who funded this research should be on trial for mass murder and treason, but they're probably going to get away with it.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by mikem170 on Sunday February 26, 2023 @04:32PM (#34949702)
> The 2004 SARS outbreak originated in a lab

This is news to me. The article you referenced opens by saying [0]:

> The World Health Organization has confirmed that breaches of safety procedures on at least two occasions at one of Beijing's top virology laboratories were the probable cause of the outbreak of severe acute respiratory syndrome (SARS) there last month, which infected nine people, one of whom died.

This seems to be saying they traced the illness in nine people back to a lab leak, not that the entire outbreak originated in the lab.

There a lot of other studies, referenced in this wikipedia article [1], which explain that the virus originated in bats:

> Phylogenetic analysis of these viruses indicated a high probability that SARS coronavirus originated in bats and spread to humans either directly or through animals held in Chinese markets.

> In 2004, scientists from the Chinese Center for Disease Control and Prevention of the University of Hong Kong and the Guangzhou Center for Disease Control and Prevention established a genetic link between the SARS coronavirus appearing in civets and humans, confirming claims that the virus might have transmitted from the animal species to humans.

In the last 15 years people have fallen ill of the plague, cowpox, meningococcus, h5n1, anthrax, and zika due to lab leaks in the Unites States [2]. These are just the leaks where people got sick and/or died, all lab workers I believe. None of that means these labs originated the diseases. The origin of a disease is separate from a localized outbreak.

[0] https://www.ncbi.nlm.nih.gov/pmc/articles/PMC416634/

[1] https://en.wikipedia.org/wiki/SARS-CoV-1#Origin_and_evolutio...

[2] https://en.wikipedia.org/wiki/List_of_laboratory_biosecurity...

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Sunday February 26, 2023 @01:19PM (#34947841)
> However, this is exactly the sort of virus that they study at the BSL4 lab in Wuhan

No it isn't. The were studying SARS-CoV-1 and WIV-1.

They sequenced RaTG13 but that is too far away from SARS-CoV-2 with a thousand random mutations across its genome. And there's no evidence that they ever recovered culturable virus from RaTG13 or were able to culture it--there's a vast gap between sequencing a virus and culturing it.

We also know about their SARS-CoV-1 and WIV-1 work because they published it. Before the pandemic they had no reason to keep work on RaTG13 secret.

This is a case of Schrodinger's BSL4 lab. We know they built chimeras of other viruses because they told the world about that, we know they sequenced RaTG13 because they published that sequence, but there's a SARS-CoV-2 progenitor backbone that they found, which for some reason they picked to be the backbone in a new set of experiments, which they had perfect secrecy over and nobody has ever found any evidence of it.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by smsm42 on Sunday February 26, 2023 @03:31PM (#34949070)
The obvious solution for this conundrum is that they did study it, but didn't publish it because the screw-up happened and all evidence was promptly destroyed. In a totalitarian state, the secrecy is the default mode. You can get exceptions and publish stuff, sure, but only once you asked and received permission. If you didn't - or in the period between you asking and permission being issued something happened - no evidence will be seen by anybody.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by SketchySeaBeast on Sunday February 26, 2023 @04:51PM (#34949895)
Perfect, then it's unfalsifiable.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by smsm42 on Sunday February 26, 2023 @05:05PM (#34950027)
Unfortunately, unless whoever destroyed evidence screwed up (happens all the time, security services have enough idiots and slackers), or somebody kept some evidence and then will defect, yes, it is likely we'll never have the proof. That's why they do it.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by SketchySeaBeast on Sunday February 26, 2023 @05:12PM (#34950110)
Well then we don't need to look anymore - its 100% solved regardless of any new evidence to the contrary.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by smsm42 on Sunday February 26, 2023 @11:06PM (#34952840)
Not sure how you made this conclusion... But of course we need to look if there's new evidence - that's what I just said, that there could be new evidence, but if there won't be then we couldn't know for sure.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by SketchySeaBeast on Monday February 27, 2023 @08:53AM (#34956395)
Because we can now say that there was any evidence we want but the totalitarian state destroyed it. We can now make any argument where the state destroying evidence fills in the gap of the theory.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lmm on Sunday February 26, 2023 @07:26PM (#34951425)
Maybe we should stop supporting the study of dangerous viruses in facilities that don't maintain adequate levels of transparency.

Regardless of what actually happened in this case (FWIW I still believe a natural origin was most likely), the Chinese authorities covered up everything to do with the lab and destroyed potential evidence before a proper investigation could take place. In court cases we have a norm that evidence you destroy is treated as evidence against you, for good reason.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by SketchySeaBeast on Sunday February 26, 2023 @08:33PM (#34951906)
I'm not making an argument regarding this instance, but to have a theory that you can't disprove really makes it not a theory and impossible to engage with.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Monday February 27, 2023 @04:44PM (#34962316)
> In court cases we have a norm that evidence you destroy is treated as evidence against you, for good reason.

Destruction of evidence is considered only evidence of consciousness of guilt and cannot be used to prove guilt alone. The court also has to consider that an innocent person may commit destruction of evidence to avoid wrongful prosecution from situations that look damning.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Tuesday February 28, 2023 @01:57PM (#34973303)
Another point is that in the SARS-CoV-1 outbreak in 2002-2004 the Chinese government acted similarly:

> Early in the epidemic, the Chinese government discouraged its press from reporting on SARS, delayed reporting to WHO, and initially did not provide information to Chinese outside Guangdong province, where the disease is believed to have originated.[19] Also, a WHO team that travelled to Beijing was not allowed to visit Guangdong province for several weeks.[20] This resulted in international criticism, which seems to have led to a change in government policy in early April.

https://en.wikipedia.org/wiki/2002–2004_SARS_outbreak

There was no BSL4 lab in Guangzhou and they didn't sterilize the market there right away, so in that case they were able to eventually track the virus to its origins--yet the reaction of the Chinese government was basically the same.

Americans have a fairly severe problem with assuming that other nations and people's will react with transparency to the US if they have nothing to hide. This is the same problem we saw with Hussein and the way that he tried to block the weapons inspectors and it turned out by his own admission that it was due to him not wanting to appear weak in the view of Iran and Hussein was preoccupied with Iran: https://www.theguardian.com/world/2009/jul/02/saddam-hussein...

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by initplus on Sunday February 26, 2023 @11:22PM (#34952928)
The circumstances that make the theory unfalsifiable (lack of transparency/controls in Chinese biological research) are the issue here. Due to the lack of transparency we will likely never have definitive proof for the origin one way or the other.

At a minimum the US government should not be funding any biological research in places without adequate transparency/controls.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by himinlomax on Monday February 27, 2023 @08:14AM (#34956013)
It's not, because all it would take to falsify it would be to do an exhaustive search of the lab's documentation and a comprehensive interview of lab employees.

We can't do it because of the CCP, not because of epistemological reasons.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by SketchySeaBeast on Monday February 27, 2023 @08:54AM (#34956405)
How would that falsify the theory? If you find no evidence you can just claim that the state destroyed it.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Sunday February 26, 2023 @04:51PM (#34949901)
The effort required to culture virus like this is fairly large, and it requires them to keep it secret in 2019 before there was any need to keep it secret. Nobody talked about it to collaborators, no sequences were leaked out, etc.

They somehow had tighter controls than Apple developing a new iPhone, before they had any reason to.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by smsm42 on Sunday February 26, 2023 @05:01PM (#34949991)
Again, you think keeping something secret needs a reason. That's not how totalitarian state works. In such state, not keeping something secret needs a reason. Everything else is secret by default. And the standard mode of action on any disaster is to deny it, lie and hide the evidence. It's not special for pandemic, it happens every time. Yes they absolutely have tighter controls than Apple, and the reason is they live in a totalitarian state and Apple doesn't.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Sunday February 26, 2023 @06:21PM (#34950807)
We know they constructed Chimeras of the WIV1 SARS-1-like virus because they published it:

https://www.pnas.org/doi/10.1073/pnas.1517719113

Pretty bad secrecy.

We knew WIV1 existed as well because they published it 3 years earlier:

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389864/

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by brigandish on Sunday February 26, 2023 @08:34PM (#34951912)
How long had they been working on either of those before publishing? You're giving the end points of the research, the person you're replying to is saying the end point wasn't reached, hence it was still secret.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by slumos on Sunday February 26, 2023 @10:39PM (#34952666)
See if you can determine that for yourself by e.g. reading the second paper as far as the first sentence of the second paragraph and then looking at the publication date.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by brigandish on Tuesday February 28, 2023 @08:08AM (#34968842)
I'm not interested in reading those papers, especially as what's relevant are the dates, which means the burden is on the person presenting them to get the dates right, no one else. More importantly, they were missing the point, which was my point.

Your point? I'm not sure if you had one. Next time, just post the date up instead of some snarky RTFM that doesn't even fit the thread.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by smsm42 on Sunday February 26, 2023 @11:11PM (#34952871)
It's not like the 2016 article was some kind of a spy leak. They were allowed to cooperate on things that lead to this publication - because in 2016, there was a reason to allow it - NIH grants alone would probably be a good reason. As soon as they learned about the screwup (that likely happened somewhere in 2019) all evidence of the works related to the leak that hasn't been published has been hidden or destroyed. Thus, we can't expect any publications about that work, at least not from 2019 onwards. You're fishing for some contradiction, but there's none - publications do not suggest absence of censorship, publications only suggest the censors had no problems with it being published. And indeed, they couldn't know in 2016 that their research in 2019 would lead to a massive screwup with a global consequences. If they were an open society, there would be a constant trail of evidence leading to the moment of the screwup - communications, orders, articles, chats, etc. In a totalitarian society, all these were under tight control by default - and as soon as it turned out they are dangerous - which became clear sometime in 2019, when the Chinese government learned about the possible leak - all this information, already tightly controlled by default anyway, was disappeared or at least made inaccessible to outsiders. It is possible it still exists somewhere in the dungeons of the Great Firewall - who knows. The point is this is why information control exists - to make such things possible. In an open society, this would be completely infeasible - tracking back everything connected to a certain research program and making it as if it didn't exist. In a closed, tightly controlled society - yes, plausible.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by permo-w on Sunday February 26, 2023 @07:22PM (#34951386)
there are millions of people who want to know what Apple is doing
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by kranke155 on Sunday February 26, 2023 @03:42PM (#34949188)
What about the request to use gain of function research to add furin sites to coronaviruses? That seems to me the smoking gun, since this lab asked for funding to do exactly that.

It’s a bit like Jaime Meitzl (sp?) said - for the first time in history you find a unicorn (furin binding site in a coronavirus) next to a lab that asked for funding to make regular horses into unicorns. But the lab says it’s “natural origin”.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Sunday February 26, 2023 @04:11PM (#34949489)
The PRRAR FCS not a known FCS prior to the pandemic so it is unlikely the lab would have genetically engineered it and they would have used something like RRXRR instead.

Other coronaviruses have an FCS and they have evolved multiple different times, independently:

https://www.sciencedirect.com/science/article/pii/S187350612...

The fact that we knew that adding an FCS to a virus would likely enhance its ability to produce a pandemic really isn't a smoking gun that we actually did it, because we're just studying and copying what nature is already doing (who is actually a much better geneticist than we are, with vastly greater tools).

And since you want to talk about suspicious "unicorns" how about the idea that a lab worker was infected in the lab, and then the only thing that they did was visit the wet market. They didn't infect anyone they lived with, or go to any restaurants, or go visit grandma and this Typhoid Mary/Mike has no existence outside of working in the lab and visiting the wet market. And this idea gets worse if you include more workers in WIV having supposedly been exposed.

What fits with the facts better is that they genetically engineered the virus in perfect secrecy and deliberately let it loose in the wet market, which is just insanity--nobody gains anything from doing that, but it is also impossible to argue against.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by kranke155 on Sunday February 26, 2023 @09:05PM (#34952106)
Why would it have happened only in the market? Seems to me that it’s plausible they just managed to cover up other points of origin for the pandemic in Wuhan and that the market was the first super spreading event.

If your only defense is that this is not the most commonly used way to add a FCS to coronaviruses, that seems pretty thin.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Sunday February 26, 2023 @11:06PM (#34952838)
And the evidence of the cover up is that there's only evidence at the wet market?

You realize that is going to rapidly descend into circular logic.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by Natsu on Sunday February 26, 2023 @04:38PM (#34949771)
* * *
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by xyzzy123 on Sunday February 26, 2023 @03:43PM (#34949194)
The argument "they would have used a published backbone and reverse genetics system" is wishful thinking.

You might interested in this paper: https://www.biorxiv.org/content/10.1101/2023.02.12.528210v2

"Discovery of a novel merbecovirus DNA clone contaminating agricultural rice sequencing datasets from Wuhan, China"

MERS is really nasty, this is clearly evidence of engineering, and guess what the system is unpublished.

Personally I suspect this paper (which came out a while ago but got "boosted" recently) is the reason for DOE "confidence update".

Media have not reported on this and "the usual" zoonosis advocates have been remarkably silent about it.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Sunday February 26, 2023 @05:39PM (#34950405)
HKU4 contamination in agricultural samples in the Country that HKU4 was discovered in does not pose a particularly controversial question as to how it got there.

While it is in the same group of beta coronaviruses that MERS is in, the HKU4 virus was first found in Kowloon and the "HK" stands for "Hong Kong" (although it would be a mistake to assume that says much more than where it was found and not what its range is throughout China)

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111821/

And coronaviruses undergo recombination (XBB.1.5 is a recombinant which is all over the news) and that produces "Chimeric" viruses in nature. Finding evidence of "gene splicing" in samples and determining it must be humans ignores the fact that nature does it better than we do, and really points at how politically biased that article is.

They want you to believe that WIV imported MERS-like viruses from Saudi Arabia and were fucking around with them in the lab, and not that those viruses are found all over China naturally and nature fucks around them constantly in much higher volume than we can.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by xyzzy123 on Sunday February 26, 2023 @06:49PM (#34951073)
Did you notice the bit where it's a cDNA clone of an RNA virus and do you understand the implications of that?

This is an engineering product.

As for "politics", sure there is a lot of that going around but you can verify this finding yourself with freely available software using the published sequences.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Tuesday February 28, 2023 @07:05PM (#34976796)
That preprint is now starting to get slaughtered in the Disqus comment section associated with it.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by xyzzy123 on Thursday March 02, 2023 @05:18PM (#35002873)
I don't think much of the "takedown" so far.

Cadhla (who works for EcoHealth alliance BTW) points out that it was HZAU who registered the rice sequences - which is not hugely relevant since the source of the contamination could be from anywhere (with an unpublished HKU4 reverse genetics system...).

Andreas points to incomplete sequence coverage (not unusual in a contamination scenario) and claims it might be "not dangerous work" because the sequence gap leaves open the possibility that the missing bit was non-functional. True but weak. It's 33 NTs of highly conserved sequence, what does he really think it would be?

Flo's comments are bizarre and seem to be claiming that https://www.biorxiv.org/content/10.1101/2023.02.12.528210v2 is plagiarizing https://europepmc.org/article/ppr/ppr353109 (the team's earlier paper which included the same finding). The claim that a reverse genetics systems for HKU4-like COVs was previously "published" is particularly weird since it was this team that had previously disclosed it.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by audunw on Sunday February 26, 2023 @03:43PM (#34949196)
Earlier in the pandemic I read a report talking about the possibility of the virus being something they sampled, and that it leaked when they accessed the sample presumably to start sequencing/analyzing it.

The theory was that it was a virus they'd have sampled from immunocompromised miners working in the same caves that the bats with the most closely related viruses inhabit. They had some references to a report with something like that happening some time prior.

It's so far the only theory I've read that seems to match the evidence.

The evidence doesn't seem to indicate that it was engineered, or that it was a product of gain of function research on animals. I think there would have been more solid evidence pointing in that direction by now, if that was the case. They would have published something related to it, or non-Chinese researchers connected to the lab would have known something.

Yet there's no evidence of any related animal resorvoir, and the virus was very well adapted to humans from the very start. And everything points to the virus passing through the lab somehow. Those things put together seems to point at them having sampled a virus that already made the jump to humans, and that somehow during the sampling, or retrieving the sample from storage, the virus escaped.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Sunday February 26, 2023 @04:26PM (#34949641)
There's many thousands more contact between bats and humans involved in mining (literally how RaTG13 and the Mojiang mine, bat guano collection for farming and just tourism:

https://www.sciencetimes.com/articles/33905/20211012/china-r...

There's a lot of economic activity in China that is close to bat habitats and there's evidence that cross reactivity to sarbecoviruses exists in a significant amount in rural china.

The researchers collecting samples were a very tiny slice of the human-to-bat-virus exposure that is going on in China all the time.

And we know that SARS-CoV-2 doesn't last very long on surfaces, it isn't transmitted by fomites. It needs to be aerosolized and breathed in. It isn't likely that the researchers were collecting live viable virus in the samples that they brought back to the lab. What they were sequencing was overwhelmingly going to be "dead" mRNA.

The idea that the lab researchers were the initial Typhoid Mary of the pandemic is also simply not believable because it requires one to believe that they lived within a bubble EXCEPT for one trip to the wet market where the outbreak happened. They didn't start spreading it around their apartment building, they didn't infect people in restaurants, didn't infect elderly relatives who wound up in the hospital, etc.

It makes "more" sense that they deliberately genetically engineered the virus and released it in the wet market entirely on purpose.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by tripletao on Sunday February 26, 2023 @05:35PM (#34950356)
> The idea that the lab researchers were the initial Typhoid Mary of the pandemic is also simply not believable because it requires one to believe that they lived within a bubble EXCEPT for one trip to the wet market where the outbreak happened.

Except that SARS-CoV-2's epidemiological dynamics are well-known to be overdispersed? Almost all lineages die out, and a few explode due to repeated super-spreader events. It's therefore unlikely that the first cluster will be discovered at the site of introduction. For example, SARS-CoV-2 was presumably first introduced to other continents at airports and seaports; but that's not where the first clusters were found.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Sunday February 26, 2023 @05:42PM (#34950440)
Explain the coincidence of why it happened to be in a wet market and not a restaurant or other gathering where people congregate. Just happened to be the one place to make it look exactly like zoonosis and extraordinarily similar to SARS-1.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by tripletao on Sunday February 26, 2023 @06:05PM (#34950657)
If you think SARS-CoV-2 arose naturally in the same city as the world's biggest laboratory collection of sarbecoviruses (which I do agree is possible), then you must agree that weird coincidences do happen sometimes? A wet market is crowded and poorly-ventilated, so it's a great place for a respiratory virus to spread, regardless of how it got introduced.

There's also the question of ascertainment bias, whether cases were found in the wet market simply because that's where the authorities looked. I assume you've seen those endless debates, which seem basically unresolvable to me given the limited information available.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Tuesday February 28, 2023 @01:38PM (#34973044)
The pandemic happening in the same city as WIV isn't really that much of a coincidence. The virus needed a large densely packed city to really take off. Wuhan is the biggest city in central China. The catchment area around Wuhan for where a virus would follow the animal trade to the city is probably large. Wuhan is also a good candidate for a centrally located lab. That only seems like a 5-10% low probability chance, which happens (it is also the second time it happened in China and the first time looked like this one, only it hit Guangzhou where there was no lab).

The infected lab worker causing exactly one massive superspreading event in the wet market without infecting anyone else, making it look exactly like zoonotic spillover, without leaving any other contacts around Wuhan is much less believable to me. That sounds like a thousand to one odds or much worse.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by tripletao on Wednesday March 01, 2023 @12:10AM (#34979008)
> The infected lab worker causing exactly one massive superspreading event in the wet market without infecting anyone else,

That's indeed unlikely, but it's a strawman. As I've noted repeatedly above, most lineages die out. If the introduction into humans occurred outside the market (naturally or otherwise), then it's quite likely that patient infected others outside the market; those lineages just died out. I remember Trevor Bedford showing genomic evidence of all the failed introductions into Seattle before the spread finally went exponential, early in the pandemic.

Pekar et al. is basically a more sophisticated version of your argument, with numerical models of the phylogenetic and epidemiological dynamics. I don't think it's convincing (since they chose their power law pretty arbitrarily), but at least they acknowledge and purport to model that stochasticity.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by kevinpet on Sunday February 26, 2023 @03:59PM (#34949382)
If you are not a native English speaker, you may want to know that you are pretty drastically misreading parents comment. He is not saying "I know this specific virus is present" but "the lab studied SARS related coronaviruses" which you in fact seem to agree with.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by lamontcg on Sunday February 26, 2023 @04:15PM (#34949537)
They're not related enough to matter.

I've lived in the United States all my life, you're just missing the point.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by ikrenji on Sunday February 26, 2023 @06:08PM (#34950687)
they collected dozens if not hundreds of samples of various viruses. not all the work gets published. in fact majority of scientific effort doesn't get published. experiments either don't work or you don't get interesting results etc... doubly so if a global pandemic started before you were done with your current project
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by 2-718-281-828 on Sunday February 26, 2023 @01:22PM (#34947877)
the interesting question isn't why China would try to cover up a lab leak because that is obvious. the questions is - why does the US actively support this cover up?
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by cld8483 on Sunday February 26, 2023 @01:38PM (#34948056)
America funded it, and it was probably the idea of American researchers in the first place. China got used, and is now embarrassed about that so they're participating in the coverup.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by r053bud on Sunday February 26, 2023 @01:37PM (#34948043)
Because what good does it do to actually dealing with the outbreak? I assume the government just made a decision that it was politically less desirable to do for a number of reasons. Mainly, probably the continuing attempts at thawing of relations with China.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by 2-718-281-828 on Sunday February 26, 2023 @01:47PM (#34948131)
that's not all there is to it. there are deeper relations between the NIH and Wuhan.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by TearsInTheRain on Sunday February 26, 2023 @02:55PM (#34948758)
If China is engaged in a behavior that lead to a global pandemic, we have to know everything about what they were doing so that we can stop this from ever happening again. Who gives a crap about thawed relations after the extraordinary amount of damage this pandemic has done to the world
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by celticninja on Sunday February 26, 2023 @03:30PM (#34949060)
What they were doing was downplaying the severity of the problem until it was sufficiently widespread that it was not just a China problem. I'm not saying that was the plan from the start, but it definitely morphed into that.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by Joeri on Sunday February 26, 2023 @03:55PM (#34949333)
The genie is more or less out of the bottle on that one. If it is a lab leak there is no stopping it from happening again and China is not doing anything special. There are hundreds of these labs all over the world, they have containment breaches all the time [1], and given the way of international politics it is effectively impossible to shut them all down. Probably undesirable as well given that labs like those are the reason we had the medical knowledge to create a vaccine.

[1] https://en.m.wikipedia.org/wiki/List_of_laboratory_biosecuri...

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by TearsInTheRain on Tuesday February 28, 2023 @09:10PM (#34977883)
I strongly disagree that they are not doing anything special. They are literally going out into remote bat caves and harvesting coronaviruses and bringing them into large population centers to study.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by ElectricalUnion on Sunday February 26, 2023 @04:39PM (#34949777)
If USA is engaged in a behavior that lead to a global pandemic, we have to know everything about what they were doing so that we can stop this from ever happening again. Who gives a crap about thawed relations after the extraordinary amount of damage this pandemic has done to the world

The money for WIV risky reasearch mostly came from the USA.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by TearsInTheRain on Tuesday February 28, 2023 @09:12PM (#34977891)
Totally agree. That should be and has to some extent been made public. The China portion of the story is a complete mystery.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by r053bud on Tuesday February 28, 2023 @12:26PM (#34972081)
I actually completely agree. We SHOULD know the true origin and causes; I just have zero faith anyone in the US will put pressure on China or accuse them publicly. That was more the gist of what I was getting at.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by wrycoder on Sunday February 26, 2023 @03:30PM (#34949058)
"At this point, what difference does it make?"

-- famous politician, responding to a question on a different issue

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by smsm42 on Sunday February 26, 2023 @03:35PM (#34949111)
That lying about pandemic origins is the best course of dealing with the pandemic is an exceptionally bold statement.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by AnimalMuppet on Sunday February 26, 2023 @07:10PM (#34951268)
That some bureaucrats might think that is a much less bold statement.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by Zetice on Sunday February 26, 2023 @03:30PM (#34949051)
You're commenting on a report that the (US Government's) DoE is saying it was lab made, so... the US isn't actively supporting any cover up, or they're doing a profoundly terrible job.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by drewrv on Sunday February 26, 2023 @03:48PM (#34949242)
Just to clarify, because the nuance is getting lost, they are not suggesting it was lab made. A naturally occurring virus can be studied and then accidentally leaked from a lab.

But yes, there's no indication that the US is trying to cover anything up. And China is secretive about all sorts of things, they're an authoritarian government.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by Zetice on Sunday February 26, 2023 @03:58PM (#34949366)
Good point I will edit.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by pgodzin on Sunday February 26, 2023 @03:54PM (#34949322)
not lab made, leaked from a lab
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by smsm42 on Sunday February 26, 2023 @03:33PM (#34949088)
Because The Experts (TM) said it's from bat soup, so they can't admit they were wrong and racist conspiracy theorists were right.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by GenerocUsername on Sunday February 26, 2023 @04:01PM (#34949409)
You are being downvoted... Bit this is too important to let skip.

I distinctly remember long stretches of time where it was a platform bannable offense and socially unacceptable to 'go against the science' and suggest this theory was feasible.

For too long bad, politically motivated 'science', drove narratives, and our society needs to be more open in discussing this so we can not fall for the same tricks next time

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by smsm42 on Sunday February 26, 2023 @04:38PM (#34949773)
* * *
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by GenerocUsername on Sunday February 26, 2023 @06:56PM (#34951130)
Real people remember it. There is a chilling-effect coming from a few institution-level controlling pillars of our society.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by swatcoder on Sunday February 26, 2023 @03:59PM (#34949385)
> why does the US actively support this cover up?

Sometimes, answers are more clear when questions are more clear.

“Why is the US waiting to secure a convincing case that produces useful diplomatic leverage instead of indulging public speculation by making an early call that wastes the opportunity?”

There’s a lot to lose by making a case that other nations can dismiss, and a lot to gain by having a case that they can’t. If there was a culpable lab leak, the game comes down to China making it easy for its partners to plausibly deny while others try to collect thorough enough evidence that they can’t. The tidbits that feed conspiracy circles might be 100% right and very convincing to individuals, but are too thin to put world leaders on the spot. For now.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by mwbajor on Sunday February 26, 2023 @04:29PM (#34949672)
In my opinion, its more likely wallstreet that doesn't want to loose their cheap Chinese sweatshop labor.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by petre on Sunday February 26, 2023 @04:01PM (#34949401)
Maybe they don't have enough evidence to support the lab leak hypothesis. Or maybe they want to prevent China from supplying weapons to Russia for the time being and they're playing the cautios stance while they don't have enough evidence. We will find out eventually in five to ten years or so. The lab leak hypothesis is quite probable.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by jimbob45 on Sunday February 26, 2023 @04:02PM (#34949415)
Didn’t Trump literally call it the “China virus” for over a year? Almost from the start? I know he got a lot of pushback from the DNC over that.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by barbazoo on Sunday February 26, 2023 @04:48PM (#34949869)
It didn't seem to be based on evidence at the time rather than a simple minded and racist bit to cover up that he had no idea what he was doing.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by jimbob45 on Sunday February 26, 2023 @05:38PM (#34950404)
As a thought experiment, who would have access to the most information in the world outside of the sitting POTUS? The richest man in the world? Surely Trump of all people would be the most qualified to make such a claim.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by AnimalMuppet on Sunday February 26, 2023 @07:07PM (#34951229)
Trump was... not an ordinary president. In particular, he didn't pay very much attention to his briefings. He may have had access to the information, but there's less indication that he used that access, and plenty of indication that he frequently shot his mouth of contrary to the facts. Whether he did so in this case is not proven, but the parent's argument doesn't work for the particular president in question.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by philliphaydon on Sunday February 26, 2023 @08:32PM (#34951899)
I don't think Trump is patient enough to sit and read. It's more likely he wanted people to tell him what's important that he needs to know about.

I'm speculating of course but if you think about it, can you imagine him sitting patiently reading documents first thing in the morning? He would get bored so quickly he would end up on twitter to complain or gloat.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by kcplate on Monday February 27, 2023 @08:09PM (#34964410)
While he may have been less than attentive to these things, he would use every bit of information that was available to him to advance his agenda and he had people around him who read/in those briefings who knew and support his agenda. Certainly his agenda pre-pandemic as it related to China was pretty much an economic war for lack of a better description.

If your intention is to motivate Americans away from Chinese products, what better way to do it then to use a scary virus that seemed to emerge from China to that end.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by sampo on Sunday February 26, 2023 @04:03PM (#34949431)
> why does the US actively support this cover up?

If it was a lab leak from Wuhan Institute of Virology (WIV), it was likely from a research program partially funded by USA.

https://www.vanityfair.com/news/2021/06/the-lab-leak-theory-...

"a zoologist named Peter Daszak, who has repackaged U.S. government grants and allocated them to facilities conducting gain-of-function research—among them the WIV itself."

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by wrycoder on Sunday February 26, 2023 @04:39PM (#34949778)
Here's a 2015 paper on successful gain of function work done at the University of North Carolina under the leadership of Ralph Baric. The work involved characterizing a synthetically constructed chimeric virus comprising a SARS-CoV backbone and a bat SARS virus spike.

It received special permission to continue despite a prohibition on gain-of-function research (Refer to the section: Biosafety and Security).[0]

Quoting:

Here we examine the disease potential of a SARS-like virus, SHC014-CoV, which is currently circulating in Chinese horseshoe bat populations1. Using the SARS-CoV reverse genetics system2, we generated and characterized a chimeric virus expressing the spike of bat coronavirus SHC014 in a mouse-adapted SARS-CoV backbone.

And from the footnote describing author contributions:

[SHI Zhengli] provided SHC014 spike sequences and plasmids

As everyone knows by now, Shi is the director of the Center for Emerging Infectious Diseases at the Wuhan Institute of Virology.[1]

It's pretty clear that Shi subsequently continued that gain-of-function work at Wuhan.

My question is, what is the correlation between the spike sequence Shi supplied for the 2015 paper and that of the early variants of SARS-CoV-2?

[0] https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4797993/

[1] https://en.wikipedia.org/wiki/Shi_Zhengli

There is also a 2013 paper, written by Peter Dazak and Shi Zhengli, "Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor".[2] Peter Daszak has been centrally involved in the US funding of the Wuhan Institute, in his capacity as president of the EcoHealth Alliance of New York.[3]

[2] https://pubmed.ncbi.nlm.nih.gov/24172901/

[3] https://nicholaswade.medium.com/origin-of-covid-following-th...

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by nxm on Sunday February 26, 2023 @06:10PM (#34950699)
Perhaps because Fauci may have been held partially responsible through gain of function research his department funded?
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by initplus on Sunday February 26, 2023 @11:31PM (#34952972)
American Virologists feared that their field would be blamed for the pandemic, and used motivated reasoning to convince themselves that the field could not be responsible for the pandemic. And the US was gripped by Trumpism, so anything in any way connected to Trump automatically became verboten.

Some of the leading voices in opposition to the lab leak hypothesis such as Peter Daszak had close academic connections (collaboration, grants etc.) with the BSL4 lab in Wuhan.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by MilnerRoute on Sunday February 26, 2023 @03:37PM (#34949139)
> The Energy Department gave a low probability to their assessment

I think that's being overlooked. (The article also notes "Four other agencies and the National Intelligence Council assess with 'low confidence' the pandemic was likely caused by natural transmission from an infected animal.")

Also, the Energy Department said this back in 2021 -- though there's since been a bunch of additional research done. ("All eight COVID-19 cases detected prior to 20 December were from the western side of the market, where mammal species were also sold," one new study found 7 months ago -- even concluding that the proximity to five stalls that sold live or recently butchered animals was predictive of human cases.)

https://www.cnn.com/2022/07/26/health/wuhan-market-covid-19/...

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by xyzzy123 on Sunday February 26, 2023 @03:41PM (#34949179)
> However, this is exactly the sort of virus that they study at the BSL4 lab in Wuhan, quite legitimately

Bat coronavirus work including chimera creation was done at WIV at BSL-2, not BSL-4.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by seizethecheese on Sunday February 26, 2023 @06:02PM (#34950638)
This is the real scandal.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by KarlKemp on Sunday February 26, 2023 @04:12PM (#34949500)
Governments cannot be sued in foreign courts, so there’s no liability.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by csomar on Sunday February 26, 2023 @10:11PM (#34952494)
Of course they can. It'll probably be a kangaroo court but you'll need a big global coalition for that.
Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by gregw2 on Sunday February 26, 2023 @05:39PM (#34950412)
It’s weird you mention BSL4 and use present tense about Wuhan when discussing covid origins.

The Coronavirus work at Wuhan was done in BSL2 environment; the BSL4 lab was still being built at that time.

Re:Lab Leak Most Likely Origin of Covid-19 Pandemic, U.S. Ag... by himinlomax on Monday February 27, 2023 @08:12AM (#34955994)
> it’s most likely a naturally created virus.

The lab leak hypothesis doesn't even rule out that it was a natural virus. It just says that the virus leaked from the lab. It could have been:

- deliberately created in the lab (gain on function)

- accidentally created in the lab through repeated cross-species contamination of lab animals

- just stored in the lab from a natural sample

- or even not deliberately stored in the lab but acquired through infection of a researcher on a collection mission.