Same vibe as "I would just simply..."

What do you think the entire medical, pharmaceutical, bioinformatic, etc. industries have been doing for decades? Are you really so arrogant to think that other people are too lazy and stupid to think of your brilliant idea and that you are simply more intelligent than everybody else? Do you really think people haven't been trying?

If they aren't mass collecting this data in the first place (for the reasons outlined above), then how can they be doing this?

Or, if they are doing this from quality samples of the population, then we have data to show that, for example, "Yes, Mr. Function Seven, your scan shows elevated levels of Widget-5a enzymes. This is often a precursor to Gadget Cancer, but 30% of the population shows this elevation, while only 1% develop the cancer. It's best to do nothing at this time unless we see further elevation. Have a good day, see you next year"

So either we have this data and we can give accurate advice, or we don't have this data because we're afraid of over-diagnosing non-problems.

I understand the fear, but it's still burying one's head in the sand to not even look.

They are mass collecting the data. They have more data than they know what to do with. Bioinformatics abuses data science at levels comparable to Google and Facebook.

They are getting quality samples from the population. But it's not a simple as "high enzyme = maybe good chance of cancer". How are you going to get those enzymes from their blood in a way that can be applied to the general population? Before that, how do you know there's not confounding factors (of which they are a LOT)?

> So either we have this data and we can give accurate advice, or we don't have this data because we're afraid of over-diagnosing non-problems.

It's not that easy.

Look at this pathway: https://www.pathwaycommons.org/guide/workflows/rna_seq_to_en...

From here: https://www.pathwaycommons.org/guide/workflows/rna_seq_to_en...

This is what people think the activation of genes is. What they THINK the activation of genes is.

Note the following:

- They don't know all the genes. They are constantly identifying new ones. The number of gene pathways people are pretty sure are complete is small. I don't know if this one is one of the "pretty sure" ones.

- Gene pathways are not just complex in terms of size, they are also non-linear. This is not a computer program, this is a horrible biological mess where biological components constantly and probabilistically emit chemicals.

I don't even think that the pathway I gave you is super representative - it doesn't feature the ridiculous non-linearity and uncertainty that many pathways at the bleeding edge have. They can get much worse.

People are not burying their heads in the sand. They are trying their almighty to dig up from bedrock and reach the sky.

> Bioinformatics abuses data science at levels comparable to Google and Facebook.

To give people a sense of this, it is not unheard of for large scale bioinformatics platforms to set off alarms and/or zone-level capacity issues with the large cloud providers.

Would you say that they could collect way more data?

> Are you really so arrogant to think that other people are too lazy and stupid to think of your brilliant idea and that you are simply more intelligent than everybody else? Do you really think people haven't been trying?

I find it hard to believe I'm reading this sentiment on HN. Do you realize nearly any disruptive idea has do the "arrogant" thing you are speaking off.

Big companies go out of business all the time, industry disappear or wane all the time, big companies/industries with lots of smart people do stupid stuff on the regular. Characterizing the desire to do something other than status quo as "arrogance" is just the bottom of the barrel. I'm glad Semmelweis didn't think the way you do.

I didn't understand their comment to mean that at all. It's not arrogant to think there might be a better way. It probably is arrogant to think that the better way is actually really simple and easy to implement.

Arrogance definitely can play a big role in success of many startup entrepreneurs. Because they think the answer is simple and their arrogance shields them from not trying. So they go down the road and find out the solution is actually quite complicated, but a small percentage succeed in accomplishing the goal.

But it's still arrogance, nonetheless.

> Are you really so arrogant to think that other people are too lazy and stupid to think of your brilliant idea and that you are simply more intelligent than everybody else?

Not OP, but yes, I do.

I've had some runins with the health system. At least the parts that I've seen are worse than the dark ages. Especially endocrinologists have absolutely no clue what they are doing. The ones I met don't even have superficial knowledge about their full-time job which they've performed for ~20 years.

And yes, this sounds arrogant. I've tripple checked whether I'm just tripping. Their knowledge is not simply outdated, but never correct to begin with.

I think it's a cultural problem which shows in a lot of areas. Medicine doesn't value human life as much as f.e. air transport

You're talking about praxis, we're talking about research. I agree the praxis can be pretty bad, but in regards to the above commenter's remarks on why people don't just simply collect data and apply it, medical professionals simply cannot try out new treatments the way they are suggesting.

To go further, a large issue/distraction in biomedical research has been Big Tech types coming in assuming that the roadblock all along has been lack of smart computational people in the process. I will not name names, but have seen so many instances of personal tech heroes coming in & claiming the underlying problem was that some of the brightest computational I've ever encountered simply didn't know how to computer.

Nothing could be further from the truth. People coming in to "disrupt" only add noise. Eventually those people either understand this and put the effort in to understand the domain or they wander off.

While it’s absolutely true that naive non-experts can end up adding a lot more heat than light, I’ve also seen non-expert people come into stagnant domains and absolutely completely transform and improve upon the state of the art.

I am skeptical of the “more data is bad” meme of screening hesitancy. It cannot be scientifically true in the strictest sense, and to the degree it’s an accurate assertion, it really seems to reveal an unscientificness to how screening data is used today in practice rather than that in principle more data is bad.

In a perfect world you're right. What it's getting at is that screening itself isn't very good in the grand scheme of things, and thus the negatives of extra screening can be argued to be worse than the extra screening. Whether or not that's true, well that's another matter.

The issue in this subthread was the notion that the only thing between the current state of affairs and high quality screening is a bit of disruption. The problem is hard, smart people are working on it, more smart people are always welcome, it'll still take a while.

It's not that more data is bad.

It's that 1) sometimes collecting the data itself is harmful at scale. E.g. mammography can cause breast cancer, or cause it to spread. 2) the patients actions as a result of the data can, and does at sufficient scale, cause further harm.

> What do you think the entire medical, pharmaceutical, bioinformatic, etc. industries have been doing for decades?

Well, let's remember that the AlphaFold team at Google solved the protein folding problem with a relatively small team in a relatively small number of years after extremely large, well funded companies whose primary business was drug development failed to do so for decades.

So yeah, it's been demonstrated to be possible that the current leaders in a field might be significantly less capable than a different team.

There's confounding here that you're ignoring. For reference, I'm a machine learning research scientist who started in bioinformatics, initially lured by the possibility of a machine learning solution to the protein folding problem.

Google's research arm has made leaps and bounds in a particular field (deep learning) and then managed to apply it successfully to a very, very hard problem (protein folding). That other companies failed to adapt Google's successes in deep learning faster than Google is not surprising at all to me.

One might argue that the impact of academic-big pharma collaboration (in the form of funding for research projects related to CASP) is what enabled a company like Google, with no independent desire to collect the massive amounts of wetlab data required to evaluate or develop a tool like AlphaFold, to even participate.

More importantly, AlphaFold hasn't really solved the protein folding problem well enough for drug development. So, the entire debate might be moot.

> let's remember that the AlphaFold team at Google solved the protein folding problem with a relatively small team in a relatively small number of years after extremely large, well funded companies whose primary business was drug development failed to do so for decades

Did they though? They did extremely well at CASP14, and much better than competing groups. But does this solve protein folding? Deepmind's marketing department would have you think so, but for those of us that work in the field we know that this is not the case.

Furthermore, does protein folding solve the relevant problems of drug design? It solve the forward problem, given an amino acid sequence predict its 3d structure. But for drug design we need the inverse problem, given a specified structure predict an amino acid sequence that produces that structure.

alpha fold was developed at deepmind, not google, they didn't solve the protein folding problem, and it's not surprising that drug discovery companies didn't reach a similar level of accuracy first.

Note that DeepMind drafted off the work of a protein folding guy from academia who had been doing this for decades.

> Are you really so arrogant to think that other people are too lazy and stupid to think of your brilliant idea and that you are simply more intelligent than everybody else?

Here's a report of a person whose wife had seasonal affective disorder. He

- deduced that a powerful enough lightbox should be able to cure SAD - didn't find any examples of such treatments in literature - spent $600 to build "LUMINATOR" - "And as of early 2017, with two winters come and gone, Brienne seems to no longer have crippling SAD—though it took a lot of light bulbs, including light bulbs in her bedroom that had to be timed to go on at 7:30am before she woke up, to sustain the apparent cure."

https://www.lesswrong.com/posts/zsG9yKcriht2doRhM/inadequacy...

We have done this for e.g. breast cancer, and that is exactly why people are cautious now, because we have real data on the harm overtesting can cause. That doesn't mean it should never be done, but that it needs to be approached with care.

Prostate cancer as well.

You are assigning beliefs to me that I do not hold. As I said, we would need a solid randomized controlled clinical trial to determine whether any particular intervention actually helps patients live longer and/or better. That's the only way we know. So go ahead and collect data, do an RCT, and let us know how it goes.

The problem with this and the nnt gatekeeping is that personalized medicine will always require stepping away from massive double blind randomized placebo controlled multiple meta study levels of evidence. From a patient perspective it feels a lot like economics largely determine medical outcomes.

If you look into QALYs it does - at least in terms of policy over healthcare choices