There is no software that would piece different ideas together to come up with a new one. That is called AI and we are not there yet.
What you want is get the results without doing any actual work yourself. This is not a problem that any software could fix.
Mek from archive.org has recently decided to give it a shot.
Which I think means: all that's needed is discipline. Which organizational scheme you use (if any) is almost irrelevant.
The useful question is then: which methods help building discipline?
Then when you open a note, a side panel with back-links opens side by side with the note. Press a key command to flick between the search bar and the note, and update the side-panel whenever a new note is opened. This would be the perfect app for me.
This means that the user blanket accepts the probability that language is similar enough in two separate thoughts to form a connection, or they receive a basket of suggestions from a program and approve/disapprove each. One inevitably leads to meaningless connections, and the other leads to work on the user's part to prune out all the trash.
What do you think?
I do and so do others. But this is not magic. Computers can't read your mind, they can't create perfect connections without the users guidance. A certain level of discipline will always be necessary. At the end you are the only one who knows what you know and need at a specific moment, any tool can only assist you in this.
Mark Berenstein is one of the original Hypertext pioneers and has built a fantastic tool for notes.
http://www.eastgate.com/Tinderbox/
This and DevonThink are the only reasons I remain on a Mac.
I think you just described dreaming.
They impose a taxonomy on thought and rely heavily on "best practices".
Even the simplest organizational schemes require a great deal of _discipline_ to be successful with, and nothing is a "one size fits all" solution.
I'm looking forward to the day when I can dump interesting thoughts (or links to articles, videos, whatever) into a "knowledge base" and it finds connections and labels things for me while I sleep.
Who's building this?