There is plenty of anxieties around the subject still, so work does not take place in the open.
Supporting Open Source projects that are used internally are still deep in the woods, ironically thought one could find reference in documentation to “helping out the community” as a stated benefit of using Open Source...
Right now there is a complete framework for research grants (national organizations and the European Research Council), but afaict no such thing exists for open source projects. I think this should change.
Also, there should be structural government support for security hardening/audits.
Then compare it to the 10-100 billion euros spent annually on scientific research [1].
I'm not saying that the budgets should be equal, but there should be some proportionality.
I also think it should be easier for universities to have scientific programmers (who would write open source software) on their payroll.
It's especially important for Europe as more research on open protocols means that the internet can become less dependent on large US corporations. And for this type of research you'd need developers.
The best implementation I can see is for government institutions to vote on the most useful OSS software with awards for the winners.