Sonic booms go parallel to your path, so a vertically moving rocket has a sonic boom that goes parallel to the ground and doesn't bother anyone.
However the big issue with rockets (other than technology which SpaceX thinks that it can handle) is that about 1/3 of people get sick in freefall. (Estimate that I read from the operators of the vomit comet.)
Do you think that that is unreasonable?
Sibling comment has a good point that hyperloop could make spaceports at safe distances more accessible.
So 15 miles is definitely out of the blast radius. What about the fireball?
Google told me the following. 15 miles is roughly 24 km. The mass of air is 1.2 kg per cubic meter. The volume of a sphere is 4/3 pi r^3. The energy of a kt is about 4.184e9 joules. It takes about 1 joule to increase the temperature of air by 1 C. When I put all of that together I calculate that a 15kt explosion has enough energy to raise the temperature of a 15 mile ball of air by about 0.9 C.
Please double check my figures and calculation, but I think that your average city can survive that. :-)
Edit: On my phone I'm getting ~5.8 joules per square meter. Google seems to be mangling the units, though, so I can't be sure it's not dropping or adding in a factor of 1,000, though.
Edit 2: assuming that figure is correct, unless it's released in <1/200 of a second, it's not competitive with the sun at the equator (>1,000 Watts/Joules per m^2 per second)
Here's the math, if you want to double check: (10 x 4.184 x (10^9 joules))/(4 x pi x (24000 meters)^2)
A supersonic jet makes a sonic boom on the ground over its whole trajectory. That's what makes it undesirable for overland travel.
I've heard it's cheaper (whether this is in terms of risk or dollars I don't know) to send up a dedicated tanker to top of a bunch of large planes that took off with little fuel than it is to make a bunch of large planes take off fully loaded with cargo and fuel.
The problem is that's a whole additional, expensive skill your pilots need.
A modern Concorde would almost certainly have an ETOPS rating which would allow for trans-Pacific routes, which is where the true time and fuel efficiency is to be found in supersonic flight.
LA-Tokyo is ~4700nmi (~8200km), and polar route flights are generally used by planes with a range around or above 7000nmi (~13000km) like the Dreamliner or the A350 XWB
ANC is still a major refueling and sorting stop for air cargo -- most all air cargo between China and the mainland U.S. passes through Anchorage. The Anchorage FedEx hub is only passed by Hong Kong and Memphis in terms of volume, and the UPS hub is also one of the largest for that company.
That's counterintuitive when you look at a flat map, but not on a globe.
Here's a flat projection of some great circle routes:
http://www.gcmap.com/mapui?P=SFO-NRT-SIN,SFO-HKG-SIN
Note that the shortest path goes a lot closer to Alaska than it does Hawaii.
That said, the furtherest north any of those charters landed in the far east was Hong Kong.
All of the relevant destinations on both sides of the ocean (Shanghai, Beijing, Tokyo, Singapore, Los Angeles, San Francisco, Seattle) are right by the sea, which of course isn't the case for Paris and London where the Concorde flew from.