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Re:Build your own private, encrypted, open-source Dropbox clone by Tho85 on Saturday July 20, 2013 @01:09PM (#6075748)
The underlying sync software (Unison) has been around for years now and is regarded as stable. So syncing should work just fine, although you should keep a backup of your files just in case.

You can also use Dropbox and Encbox together if you're unsure: Point your Dropbox installation to ~/Encbox and have Dropbox sync your (then decrypted) files. So you can be sure to have backups, file sharing features, etc. and see if Encbox is stable enough for you.

Re:Build your own private, encrypted, open-source Dropbox clone by aw3c2 on Saturday July 20, 2013 @01:20PM (#6075795)
I often have Unison not notice file changes until I repeatedly scan or sometimes even until weeks later. If I new a better alternative I would not use it.
Re:Build your own private, encrypted, open-source Dropbox clone by Tho85 on Saturday July 20, 2013 @01:31PM (#6075830)
They use some kind of heuristic to make change detection faster, see their documentation: http://www.cis.upenn.edu/~bcpierce/unison/download/releases/...

Maybe that's the root cause of your issues?