Re:Nginx for Developers: An Introduction
by ChikkaChiChi on Wednesday June 19, 2013 @12:55PM
(#5906687)
I may be misunderstanding you, but sites-available and the conf files are usually two separate entities. sites-available | sites-enabled is analogous to using a2ensite in Apache without the automagic (you symlink yourself)
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On systems that have both, yes, they're separate. But that separation is something the distribution does to help you organize your rules — to nginx, they're all the same AFAIK.