In a recent Yegge interview, he mentions that he often throws away the entire codebase and starts from scratch rather than try to get LLMs to refactor their code for architecture.

This has been my best way to learn, put one agent on a big task, let it learn things about the problem and any gotchas, and then have it take notes, do it again until I'm happy with the result, if in the middle I think there's two choices that have merit I ask for a subagent to go explore that solution in another worktree and to make all its own decisions, then I compare. I also personally learn a lot about the problem space during the process so my prompts and choices on us sequent iterations use the right language I need to use.

Honestly, in my experience so far, if an LLM starts going down a bad path, it’s better just to roll back to a point where things were OK and throw away whatever it was doing, rather than trying to course correct.