You'd be very wrong. There are hundreds (thousands? tens of thousands?) classified missions going on all the time involving large amount of people. And aside for the exceedingly rare whistleblower, all of them are kept secret for decades or more until they get declassified (sometimes never).
(Not trying to give any credibility to the previous comment, just commenting on how effectively governments keep classified secrets.)
Not many of them involve murdering an entire planeload of civilians.
You of course don't know that, not having access to compartmentalized top secret material.
If you did, you couldn't post here (or anywhere) about it.
The US has vast intelligence and military resources, but resources can't create operational miracles. Disappearing a civilian airplane and keeping it disappeared would be such a miracle.