Including Windows up-front ensures that whoever picks up the book can make use of it immediately, no matter which computer they happen to be sitting in front of.
Also, as one who knows the Unix command line pretty well but knows next-to-nothing about Windows, it's good to get exposed to a similar-yet-different style of command line.
And if I ever need to use Windows again I plan to try this book first: By covering both in parallel, the book might turn out to be a pretty good guide to learning one in terms of the other.
Though this does assume the user is allowed/enabled to install software.
Barring that, bootable CD / USB distros are also highly tenable. The default Ubuntu installation disk includes this, though there are many other options.
I can use a POSIX environment anywhere. It's one less hurdle if that's the tool I'm using.
I've learned (and forgotten) numerous proprietary system languages. I prefer sticking with stuff that will be around. POSIX/Unix/Linux have demonstrated staying power.