Also, whales in particular are an interesting example, because the vast majority of them were slaughtered completely unnecessarily by the Soviet Union just to fulfill arbitrary production quotas: https://psmag.com/social-justice/the-senseless-environment-c...
I was reading GP's comment as not so much about whales as about the kind of thing that could happen to any flora or fauna, e.g. bees. Sooner or later we're going to deplete something that has unintended ecological and economic consequences.
But as a response to the paper, I just think it's a hard argument to make that there are specific material limits to economic growth.
https://en.wikipedia.org/wiki/Great_Famine_(Ireland)
map of population death toll:
https://en.wikipedia.org/wiki/Great_Famine_(Ireland)#/media/...
Ireland still hasn't repopulated. Still half its 19th century peak population roughly.
Prior to 1700 there were estimated over 350,000 blue whales in the world's oceans. Now, only an estimated 25,000 remain.
Human-caused complete extinction is very common, particularly for megafauna. E.g. giant sloths in North America and most large animals in Australia went extinct within centuries or millenia of human settlement.