There's no way a manufacturer could be expected to EMI test a product in every conceivable way a customer might wish to use it. For many products there's simply too many combinations of use-cases or features. So the rules generally require to test in a typical customer use or by following the instructions for use which come with the product.
As soon as you start using cables which didn't come with the product, it's on you to ensure that the emissions of the new cable and the product don't combine to cause problems.
Some cables (not just USB cables) are utter crap for interference.
If it does require a particular cable, then the cable should not be removable.
Shonky manufactures wouldn't be able to gain advantage by cutting corners.
The standard EMC tests should be specified using generic cables, connectors, etc.
https://github.com/osqzss/gps-sdr-sim
(Seriously: Don't do this unless you're taking extreme care not to radiate outside your lab.)