The copyright owner would then verify if it is indeed a copyright infringement, and if they believe it is, and the user still believe it isn't, the case should be brought to some quivalent of "small claims court", where both sides would present their sides, and the loser has to pay some fine (not too large, but still high enough to deter pointless cases.. eg $1000 (to cover the court cost), and damages up to eg. $1000 due to lost views, or damages due to unlicenced distribution).
Basically, make it worth fighting for, if you're sure you're right in what you're doing, and not too expensive, when eg. Sonys lawyers build a multi-year case, destroying you financially, even if you're doing the right thing.
Again, just spitballing. I have no idea what the reality of the situation is.
IOW, YouTube's system may be a response to copyright legislation, but it does not apply that legislation. Appeals to the fair use doctrine are missing the point. The doctrine does not apply since YouTube's actions are not constrained by copyright law.
IANAL, as you can probably tell. I may be wrong about what YT are required to consider, but in that case, I don't see how they can operate as they do.