Of course, but my concern is that DoH makes it easier for apps (Chrome, etc) to handle their own DNS queries internally rather than relying on the device's network libraries.

MiTM intercepting HTTP(s) traffic on my Android devices is really difficult due to certificate pinning. The only way to quantify how many unexpected requests apps are making was to watch DNS traffic. If, one day, these apps just make a single DNS request to Google's DoH host then encrypt all their traffic from there onwards, I'd have no insight into what's going on in my own device.

I am not a fan of DNS over HTTPs for similar reasons too.