About the OP: I effing _love_ pizza but struggle to make it at home. The quality and quantity of knowledge in this post is fantastic!
I'm not the biggest fan of Tony's margherita, but it seems the dude can make a perfect pizza in practically any style. Capo's is the best deep dish pizza I've ever had, including Chicago!
I start dialing at 4pm and get a 7:30pm pie....
Awesome place though - totally worth it. Between Emilia's the Cheeseboard and Zachary's Berkeley has a pretty awesome choice of Pizza. Boot and Shoe is also opening a location on Shattuck ....
berkeley does indeed have good pizza. outside the neopolitan pizzerias, gioia is excellent, arinell is one of my favorites for a NY slice (same as the one on 16th & valencia), and artichoke basille's isn't great but for a gigantic margherita slice at 3am, I'll take it! make sure to check out benchmark in kensingson (basically berkeley) too.
I always find Una Pizza Napoletana extremely soft and doughy, and personally I think it's really overrated. Maybe I've just gotten bad pies on the two occasions I've tried it.
This is just hilarious. Compared to NY pizza, "soft and doughy" is what most pizzas in Naples and Rome are. That's precisely the original concept.
When pizza crust resembles naan (overly soft, pliable after baking) things have gone too far.
jeff varasano's website is a great resource for pizza hackers and lays a lot of myths to rest (like proofing). my own process (which I cook in a blackstone pizza oven at ~800°) has a bit more in common with tony gemignani's basic neopolitan (described in his pizza bible), with the addition of the earlier and longer autolysing period used by jeff. the difference is night and day and I wish I'd learned about it a lot sooner!
if you're in the bay area and this kind of pizza is your thing, be sure to check out the following places --
SF: pizzetta 211, una pizza napoletana, tony's, firetrail, a16
oakland: boot & shoe, pizzaiolo, also a16
berkeley: lucia's, emilia's
on that list, emilia's is far and away my favorite. it's a one man operation, dirt cheap ($21 tax included for an 18" pie), and just impossibly good. he gave me some of his sourdough starter once, and killing it rather quickly is one of my greatest regrets.