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Re:Cancer Isn’t a Logic Problem by esahione on Saturday April 01, 2017 @03:49PM (#14013805)
Erm. This is a terrible argument.

The universe is logical. Each cell in the human body is at its core just a very complex state machine.

What we call cancer is just a particular state for a cell, and its descendents.

Find a way to change the cell state, we end cancer. And we know we can change a cell state-we can transform skin cells into stem cells, so what would make it impossible to turn cancerous cells into non-cancerous cells?

We just haven't found out the proper way to do so. It takes data, and simulation, and lots of time. At some point we'll figure it out.

I think the only misguided attempts are chemotherapy-based - damaging cells indiscriminately, just because cancer cells multiply faster and thus accumulate dna damage faster and thus die faster than normal cells. This means that unless you kill all the cancerous cells your cancer will come back. The problem is chemotherapy drugs will also be damaging your body in other ways, depressing your immune system, and thus making it easier for any remaining cancerous cell to start it all over again.

I believe it's much easier to simply figure out the right cocktail that would change cancerous cells into normal cells again, and then find the delivery mechanism for that.

I can see a future where we can transform cancerous cells into cancer-killing cells (let's say T/B Cells) that would just cascade into the complete eradication of cancerous cells within an organism.

This guy's argument boils down to lack of imagination.

Re:Cancer Isn’t a Logic Problem by tyingq on Saturday April 01, 2017 @04:12PM (#14013909)
He does spell out why he doesn't subscribe to that approach:

"Cancer cells are not simply a disorder or breakdown in a mechanism, but an organism going on a full-tilt offensive, using multiple, often shifting strategies to produce and use molecular fuel, win resources, and evade the immune system. If so, then the rules of the game may change—these insights suggest that the war on cancer may be endless."

I don't have any expertise here, so I'm not saying he's right or wrong. But it doesn't seem to be a lack of imagination.

Re:Cancer Isn’t a Logic Problem by mrestko on Saturday April 01, 2017 @05:02PM (#14014150)
The author does not lack imagination. You may, however, lack knowledge of biology. What you're boiling down to a "cell state" represents dysregulation of the most complex object in the known universe. A single human cell is vastly more complicated than anything made by mankind.
Re:Cancer Isn’t a Logic Problem by JabavuAdams on Saturday April 01, 2017 @05:29PM (#14014280)
I agree with your point, but am always a bit put off by these "most complex ... in the known universe." It's something that people say that doesn't really hold up to cursory scrutiny.

E.g. we think of stars as big balls of fusing matter. But that's an idealisation. Is a star really less complex than a human body? It all depends on which questions we want to answer. So there's an asymmetry in this argument.

Take a thing that we're trying to understand down to the finest detail, and compare it to a caricature of some other thing that we're not trying to understand at such a fine resolution.

Re:Cancer Isn’t a Logic Problem by dwaltrip on Saturday April 01, 2017 @06:36PM (#14014552)
A common measure of complexity is the amount of information required to fully describe or recreate some system.

If you simply gather a very large number of hydrogen atoms into a region of space at a certain density, you will create star. From this angle, it isn't terribly complex.

The instructions for creating a cell from scratch are... immensely more complicated.

The star's behavior, .e.g. the movement and changes of the convection zones, fusion dynamics, how the magnetic fields change over time, coronal mass ejections, sunspots, etc. may be extremely complex. I think few people who know much about stars would disagree on that.

But I would wager there are many more orders of magnitude of complexity going on in a human cell, from an information theory perspective. Even just describing individual proteins themselves and how they fold is phenomenally difficult.

Of course, I may be wrong about the cell's behavior having higher complexity. The important take away is that it is possible to make such comparisons in a meaningful way.

Re:Cancer Isn’t a Logic Problem by JabavuAdams on Saturday April 01, 2017 @07:41PM (#14014819)
Good points, but there's still something missing in the comparison. It's the difference between the initial information content, and the dynamics. Suppose we had to fix some problem in a star such that we need to precisely manipulate the magnetic fields, and perhaps things at a quantum scale. At that point, we are concerned with the fine-scale configuration of that particular star. Your proposed star creation algorithm only gives an ensemble over all stars of that particular mass and initial composition. It has less information content, because it doesn't create a particular star. I.e. we are willing to accept a huge class of individuals that we call "stars".

So, we're back to comparing thing A that we need to understand at the finest scale, to thing B where we ignore its individual complexity in favour of the stereotypical version. It's easy to estimate the gravitational attraction or mass of a cell. It's this fine-scale manipulation that causes these severe requirements for deep understanding.

EDIT> :) The instructions for creating life are even simpler. 1) Have a Big Bang. 2) Wait.

Re:Cancer Isn’t a Logic Problem by dwaltrip on Saturday April 01, 2017 @09:45PM (#14015283)
Hmm. You are making me think hard, which I like. Given that any human description of a system is going to be an approximation of reality, I suppose the one of the key difficulties is determining which aspects of the system are more important for our model to more closely match.

Even if the information theory metric of complexity is somewhat flawed, given our limitations, I think it is a useful tool. I'm not sure what would be a better way of comparing complexity.

At the very least, I think I can make statements such as: "a closed container of hydrogen gas at room temperature and pressure is a much simpler system than a Swiss watch", which we could roughly quantify in a somewhat robust way. The hydrogen part is easy, as the atoms are indistinguishable, and their movements can be closely approximated with simple formulas.

P.S. I just remembered a good (and short) minutephysics video on entropy & complexity, perhaps it is worth linking: https://youtu.be/MTFY0H4EZx4

Re:Cancer Isn’t a Logic Problem by rgejman on Saturday April 01, 2017 @10:08PM (#14015369)
Is it possible that no individual star OR individual cell can be sufficiently described because of quantum uncertainty effects that would affect any "object" with electrons (speaking as a biologist; not a physicist).

Also: this is a really great, really stellar thread.

Re:Cancer Isn’t a Logic Problem by JabavuAdams on Sunday April 02, 2017 @08:58AM (#14016981)
Not sure how electrons enter into it. Quantum Mechanics (QM) isn't limited to electrons. Chemistry is largely focused on electrons, so maybe that's where you were first introduced to QM?
Re:Cancer Isn’t a Logic Problem by Palomides on Saturday April 01, 2017 @04:14PM (#14013928)
cancer isn't a particular state, except in the vaguest sense of 'continually multiplying, but like, in a bad way'.

any person's cancer is millions/billions of semi-independent, extremely complicated, poorly understood state machines, with a variety of mutations, constantly interacting and evolving against any treatments applied and immune reactions.

imho, cancer is a fundamental disease/property of multicellular life, and trivial reductionist perspectives completely out of touch.

Re:Cancer Isn’t a Logic Problem by md224 on Saturday April 01, 2017 @04:44PM (#14014075)
> imho, cancer is a fundamental disease/property of multicellular life

I like analogizing between multicellular organisms and nation-states, in that both are complex systems built upon the coordination of many individual systems (cells/people). In the case of cancer, what we have is essentially rebellion, a failure of control: individual cells decide to stop cooperating and instead begin competing with the body that houses them. So I agree with you... rebellion is always a threat to any system of control.

Unlike actual rebellion, though, there's no way the cancer can "win" in the sense of taking over control of the body. If only cancer could realize the futility of its crusade...

Re:Cancer Isn’t a Logic Problem by abecedarius on Saturday April 01, 2017 @04:31PM (#14014013)
In principle it shouldn't matter that cancer is not well defined, if health is well defined. "Just" visit every single cell and repair its gene sequence to your body's consensus sequence, and similarly for the epigenetic state to the extent necessary -- the latter requires more knowledge to do correctly, but otoh seems less crucial.

This is of course ridiculously ambitious compared to the current state of the art, but I think it's a reasonable start to countering the claim that a general cure for cancer is impossible in principle.

Re:Cancer Isn’t a Logic Problem by Palomides on Saturday April 01, 2017 @04:51PM (#14014101)
A cell /is/ epigenetic state, and the effect of any piece of DNA is profoundly controlled by other pieces of DNA, RNA, proteins, RNAs interacting with RNAs, RNAs interacting with proteins, proteins interacting with proteins, etc. Scrubbing the proteins, RNA, and so forth from a cell without killing it is inconceivable.

That said, I don't want to say that cancer is fundamentally beyond us. I think cheap sequencing and emerging highly targeted DNA editing systems, along with better understanding of the immune response to cancer, will get us most of the way there in a practical sense.

Re:Cancer Isn’t a Logic Problem by abecedarius on Saturday April 01, 2017 @05:24PM (#14014264)
Repairs of all these things are performed by the cell itself without killing itself, so they're surely physically possible. But they're limited by a lack of outside information -- e.g. if the DNA is too corrupt, the repair processes can't check the uncorrupted DNA of other cells. That could be fixed with advanced enough technology.
Re:Cancer Isn’t a Logic Problem by Palomides on Saturday April 01, 2017 @05:39PM (#14014332)
killing the cell is actually not a big deal, any given cell is generally replaceable.

What you suggest is more or less what I mention; you could, say, try to add back some genetic machinery for the cancer cells to recognize that they're defective, and then they kill themselves. Or help the higher level repair mechanism (the immune system) target cancer cells.

To my understanding, trying to fix anything at the level between whole cell and DNA mutation is much harder.

Re:Cancer Isn’t a Logic Problem by abecedarius on Saturday April 01, 2017 @06:07PM (#14014444)
Yes, I'm not gonna pretend to know what avenues are promising or how long it'll take to invent -- maybe humans will go extinct or obsolete first. I just disagree with the article's pooh-poohing towards "why don't we include in our portfolio of bets some actually trying for a cure someday".
Re:Cancer Isn’t a Logic Problem by jessriedel on Saturday April 01, 2017 @05:36PM (#14014318)
This argument doesn't follow. The fact that most multicellular organisms get some cancer yet organisms with quadrillions of cells exist is good evidence that cancer rates can be driven to arbitrarily small levels; there's no fundamental lower bound. In the ancestral environment, cancer rates are set by a resources trade-off, and, since we have vastly more resources, there's no a priori reason to think we can't drive the cancer rate vastly lower than today.

It's like arguing that entropy always increases and therefore fighting disease is fundamentally hopeless, or requires non-logical approaches. Yes, of course "ill health" can't be cured in general, but we can drive disease rates ever lower.

Re:Cancer Isn’t a Logic Problem by Palomides on Saturday April 01, 2017 @05:53PM (#14014377)
I agree in a long term sense (we'll figure it out eventually, and fuck evolution), but I don't think we can assume evolution leaves us in a situation where cancer is easy to solve, and we just need to tie off some loose ends, or turn up a few knobs. And I don't think the understanding of cancer levels in, say, whales is developed to do more than guess something is going on. Some theories suggest better repair mechanisms, others that it's simply different selective effects at the cellular level in larger organisms.
Re:Cancer Isn’t a Logic Problem by jessriedel on Saturday April 01, 2017 @06:18PM (#14014488)
> I don't think we can assume evolution leaves us in a situation where cancer is easy to solve, and we just need to tie off some loose ends, or turn up a few knobs.

Sure, but no one disputes this. Silicon valley investing in cancer research does not imply anyone takes such a silly position.

Re:Cancer Isn’t a Logic Problem by openasocket on Saturday April 01, 2017 @05:57PM (#14014395)
Surprisingly, it isn't fundamental to multicellular life! Consider the naked mole rat. In decades of study, and exposure to mutagenic compounds, there are been only one or two documented cases of cancer in naked mole rats. The reason why isn't clear, but it shows that it is possible to dramatically reduce the prevalence of cancers of all kinds. I agree cancer can't be completely gotten rid of, but the likelihood of it can be reduced by orders of magnitude, and least in theory.
Re:Cancer Isn’t a Logic Problem by prashnts on Saturday April 01, 2017 @04:55PM (#14014122)
Chaotic, unpredictable behaviours can emerge when simpler, predictable elements are brought together. A double pendulum is a good example of this.

Agreed that we don't yet know how to regulate the apoptosis, or understand how metastasis works. DNA Methylation, small RNA regulation, and purpose of non-coding RNA isn't very well understood yet, too.

> I believe it's much easier to simply figure out the right cocktail that would change cancerous cells into normal cells again, and then find the delivery mechanism for that.

I reckon much of this has to do with small RNA and miRNA based regulation of transcription. Essentially the specific portions of the RNA/DNA are "silenced" by several regulatory factors. If a growth regulator gene, say CDKNA is accidentally silenced then the cell would undergo an uncontrolled growth, _with_ mutations. This in turn will grow "diseased" cells, eventually causing cancer. Trouble is, we just do not understand this properly, yet.

Re:Cancer Isn’t a Logic Problem by obstinate on Saturday April 01, 2017 @05:42PM (#14014338)
Double and triple pendulums have been solved: https://www.youtube.com/watch?v=cyN-CRNrb3E

I have little doubt cancer will be someday as well. It might not -- probably won't -- happen in my lifetime. But if humanity hasn't collapsed, I find it very unlikely that we're still dealing with cancer in a thousand years.

Re:Cancer Isn’t a Logic Problem by maxerickson on Saturday April 01, 2017 @04:11PM (#14013907)
Why is it misguided to do things that are known to be effective?

I think for people with cancer right now, waiting for magic would be a lot more misguided than chemotherapy.

Re:Cancer Isn’t a Logic Problem by Operyl on Saturday April 01, 2017 @04:38PM (#14014046)
There's some days during my treatment that I'd almost be tempted to. Chemotherapy is rough :(
Re:Cancer Isn’t a Logic Problem by genkaos on Saturday April 01, 2017 @05:15PM (#14014232)
Stay strong!
Re:Cancer Isn’t a Logic Problem by nabla9 on Saturday April 01, 2017 @04:21PM (#14013969)
I don't think you understood his cancer is ecologic, not systemic argument correctly.
Re:Cancer Isn’t a Logic Problem by idlewords on Saturday April 01, 2017 @04:08PM (#14013892)
You just solved cancer from first principles on a message board. Congratulations!
Re:Cancer Isn’t a Logic Problem by atomicthumbs on Saturday April 01, 2017 @04:20PM (#14013958)
thank you for warning me in advance about your terrible argument
Re:Cancer Isn’t a Logic Problem by hprotagonist on Saturday April 01, 2017 @09:16PM (#14015152)
>The universe is logical. Each cell in the human body is at its core just a very complex state machine.

Even if determinism holds (and, spoiler alert from about 1927, it doesn't), you can't avoid chaos. Lorenz found that out and defined Chaos: where the present determines the future, but the approximate present does not approximately determine the future.

I assure you, biological systems exhibit all the hallmarks of (possibly) deterministic mathematical chaos.

Re:Cancer Isn’t a Logic Problem by mannykannot on Saturday April 01, 2017 @06:09PM (#14014453)
I suppose that by 'just', you mean 'can be reduced to', but 'just' also implies there is not much to it, which is definitely not the case here.

More concretely, the combinatorial complexity of the state-machine approach makes it infeasible.

Re:Cancer Isn’t a Logic Problem by goatlover on Saturday April 01, 2017 @04:31PM (#14014018)
>> The universe is logical. Each cell in the human body is at its core just a very complex state machine.

So the universe is just math, basically? Or maybe a computer program?

Re:Cancer Isn’t a Logic Problem by hprotagonist on Saturday April 01, 2017 @04:03PM (#14013871)
Ever done any wet lab research?
Re:Cancer Isn’t a Logic Problem by ue_ on Saturday April 01, 2017 @04:54PM (#14014116)
>The universe is logical.

How so?

>at its core just a very complex state machine

Why do you say that?