This is one of the reasons why the FSF, for instance, sided with Google but still urged the Supreme Court not to take the case. They said the GPLed OpenJDK already gave Google the right to the APIs in question, but also noted that there wasn't precedent any court needed to defer to for the Supreme Court to address anyways.
It is true that they implicitly affirmed the decision in this particular case, but as to the larger question of copyrightability of APIs, as I mention above, the reasoning for denial could just as easily be they didn't think this case would be a good test for that question for whatever reason.
Wikipedia cites a few cases in which the Supreme Court has explicitly stated this in [1] (see paragraph starting with "Conversely...")
That's not an affirmation. An affirmation would be if the Supreme Court took the case, and agreed with the Federal Court. This is "we're not going to bother", which leaves the decision as good precedent in that Federal court (but not in any other).