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A comment on How I Wrote an Ultra-Fast DNA Sequence Alignment Algorithm in JavaScript. Parent comment
Turns out they aren't actually after an alignment per se, but rather trying to match a DNA binding motif.
(You're right though about this not being an alignment, rather just a substring search with degeneracy).
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Turns out they aren't actually after an alignment per se, but rather trying to match a DNA binding motif.
(You're right though about this not being an alignment, rather just a substring search with degeneracy).