Take these graphs into account when answering: http://www.chrisstucchio.com/blog/2012/flash_crash_flash_in_...
Automated trading has probably been an unqualified win for normal investors.
The mistake you're making is thinking that human reflection is an inherently "good" thing to have. Humans have cost their companies orders of magnitude more money than algorithms have.
If you want to understand how minor, compare the cash piles HFT companies manage with cash piles real economic players manage: The biggest HFT firms I know of are Virtu & Knight/GETCO, which both have a bit over $1 billion under management. Compare that the CALPERS pension fund's $300 billion, or with Goldman Sachs or Norways' sovereign wealth fund, both of which have about $900 billion in assets, or with PIMCO's bond fund ($2000 billion) or BlackRock's total AUM ($4500 billion).