Chalk is also less expensive. As one data point: 48 sticks of chalk for $4.30[1] versus 12 markers for $7.74[2]. I'm not sure about the bulk-price comparison, or if colleges can get dry-erase markers for cheap. Although, many of my professors carried their own supplies as markers left in rooms were usually stolen.
There could be a health comparison to be made between dry-erase marker fumes and chalk dust, but I know nothing about it off-hand.
[1]: http://www.amazon.com/Crayola-Non-toxic-Anti-Dust-Chalkboard... [2]: http://www.amazon.com/Expo-Chisel-Erase-Markers-80001/dp/B00...
Some of them are legit: older professors often have better handwriting at blackboard; chalk is sometimes better for certain drawings; left-hand smear; etc.
I suspect the biggest reason is that, in math circles, blackboards have a much larger cool/nostagia factor.