Those security features are genuinely only useful for stopping people from installing Linux and open BIOSes. They can only protect computers from their users, not from the NSA.
Remember one simple fact: with all such schemes, the end user is the one party involved who isn't trusted.
Apple's software update process allows for remote targeting of individual machines by MAC address, for example.
For reasons that fall far short of evading intelligence agencies, the user should be able to flash her own BIOS whenever she wants.
Better and more choices in open source BIOS solutions might help in this regard.
In my opinion, it is precisely the notion that the user need never control her BIOS that was used to try to maintain IBM's monopoly on the PC, and later to maintain Microsoft's monopoly on the PC OS. Whatever the motivation might be, I would welcome a renewed focus on making the BIOS open and something that a user can choose, just as she chooses her own bootloader and OS.