I get that HN is awfully bare-bones in its appearance, but this I think is a bit too far.
You can argue that websites should be written to conform to the standards-violating behavior in Apple's browser rather than actual Web standards, but we already went through that with Microsoft in the '90s and early 2000s, and I don't think you'll find a lot of people who are eager to return to those days. Browser-makers are expected to conform to the standard, not vice-versa.
I am sympathetic to the fact that this is inconvenient, because I use Apple's software too. But it's Apple that's responsible for the inconvenience, not all the web designers who are correctly following the standard.
So no, Hacker News is in the wrong here. They're relying on the assumption that the user is using a browser that renders scrollbars, and providing a sub-par experience for any browser that does not. This is somewhat analogous to a site that only renders correctly in IE.
> The behavior of the 'auto' value is user agent-dependent, but should cause a scrolling mechanism to be provided for overflowing boxes. — http://www.w3.org/TR/CSS2/visufx.html#overflow
Apple's rendering is overly pretty to the point of being useless. They dropped support for a perfectly reasonable semantic requirement (make all the content available) which was in the spec literally before their browser existed.