This is what the Matt Pocock /grill-with-docs solves. It helps to build a ubiquitous language that helps with domain modelling. This along with the codebase seems to help agents a lot. I'm not clear on how the Nvidia tool here improves on this, or how it is more reliable?
An ontology in this kind of context means a more precise machine readable spec of this and how it all relates to each other. You can totally build one by hand. The idea here is I think that it tries to figure it out itself and can take corrections over time, so you can ask natural language questions and get more reliable results rather than hoping an llm works out what "customers this month" means the same way each time over a wide span of data rather than having a much clearer API to work against.