The threat is lateral, not vertical. The system works by equal tension, not hierarchy.
The "check" to this power itself is also the reach: A pardon does not reach state crimes or civil liability. And the "check" to the person with the power of a federal pardon (the President) is political removal and later criminal charges like bribery - subject to Article 1, Section 3, Clause 7 of the Constitution [1]:
"Judgment in Cases of Impeachment shall not extend further than to removal from Office, and disqualification to hold and enjoy any Office of honor, Trust or Profit under the United States: but the Party convicted shall nevertheless be liable and subject to Indictment, Trial, Judgment and Punishment, according to Law."
1 - https://constitution.congress.gov/browse/article-1/section-3...