That's why. Due to reasons[1], ZFS does not have the capability to rewrite block pointers. It's been a long requested feature[2] as it would also allow for defragmentation.
I've been thinking this could be solved using block pointer indirection, like virtual memory, at the cost of a bit of speed.
But I'm by no means a ZFS developer, so there's surely something I'm missing.
[1]: http://eworldproblems.mbaynton.com/posts/2014/zfs-block-poin...
Once you get a lot of snapshots, though, the indirection costs start to rise.
I've also heard there are some experimental branches that makes it possible to run Hammer2 on FreeBSD. But FreeBSD also lacks RDMA support. For FreeBSD 15, Chelsio has sponsored NVMe-oF target, and initiator support. I think this is just TCP though.
Just store fingerprints in a database and run through that at night and fixup the block pointers...