Either those protections are technological, baked into the OS, and therefore apply equally to all installation sources, or they don't exist. There's no in between.
They're intentionally conflating these objectives to give themselves an excuse for maintaining their stranglehold on users and developers alike. They need to give up some ground if their security concerns are to be taken seriously.
I'm sure all the smart people in Cupertino (and elsewhere) can figure out some really great solutions for protecting users in an honest manner, if only their leadership didn't instruct them otherwise.
That doesn’t reflect my experience submitting apps, nor as a user of Apple devices. It’s certainly imperfect, but it achieves a lot more than if they simply stopped doing it.
[edit] and in fact, some of the automated checks wouldn’t be practical to run on a user’s device—are those also totally ineffective?
It keeps software and service vendors from going around security and privacy protections. Folks don’t always have a choice of what they have to install, so “just don’t install their stuff if you don’t like it” isn’t sufficient to achieve the same results, even if we ignore the inherent difference in UX between “100% of the software for this goes through the App Store” and “some software is not on the App Store”.
Doesn’t mean you have to agree that path is better, of course, but it’s also definitely not so easily dismissed as ridiculous.