Same, the 106/109 keys JP layout is wonderful!
I use the Ro key as a quick desktop toggle (right next to PageUp on my Thinkpad keyboard) and the Yen key as a full-word erase (like Ctrl-W on bash)
The extra left and right thumbs are also extrely helpful to have Home and End in an easy-to reach position.
Another example I can think about: remap the Ro key to toggle between international layout while it's pressed, so you can switch between layouts with a key right next to the shift key.
For example, on a US/RU settting, press Ro while pressing the 6 keys to the right of Tab in a sequence and you would get ЙЦУКЕН, don't press Ro and do the same: you would get QWERTY. Mixing and matching in both upper and lowercase would be very easy.
This still leaves you with the Yen and the Ro key to map for other things!
https://community.frame.work/t/request-review-of-korean-belg...
(am not even Japanese, just have bad habit of using thumb clusters a lot, and this is the only layout with small space bar)