Just go to any construction site and observe how many are dealing with paints and solvents without any masks, let alone a properly fitted one.
In many ways, metaphysics is just a self-referential annoyance.
Not necessarily. There is chance and entanglement on small scales.
Causation is an emergent property. It might not also hold. It could be all Superdetermined. Or synced to quantumly evolve.
In natural sciences, which include physics, you experimentally find that if you do X a few times, you get Z. That’s the extent of your hard claim. You can devise models that portray X as “causing” Z for simplicity, but the moment you start making claims about definite causal relationships you’d be making (implicitly or not) unfalsifiable claims about “underlying reality”, or in other words engaging in metaphysics. Maybe X causes Z, or maybe some unknown Y causes both you to do X and Z to occur—if you are evaluating a system of which you yourself are part, it is a fallacy to assume you possess complete knowledge about it.
Metaphysics exists (see what I did there?) because it says it does, not because science needs it somehow. We can’t take an existing paper and use metaphysics to add causality to it. We can only use metaphysics to weaken papers, and only metaphysically.
A model, especially when described to a layperson, can offer various simplifications (such as electrons flying around their atoms like planets around a star, or X causing Z), but no one seriously considers a model as literally depicting reality.
An explanation with unfalsifiable claims is always slightly metaphysics.
Metaphysics, and philosophy in general, is how we have natural sciences, scientific method, reasoning, all those things. Dismissing it is not even wrong, it’s nonsensical because it’s not a sibling, it’s a parent.