Of course such a virus could also have evolved naturally by a similar path; lots of sarbecoviruses are just a single mutation away from that FCS, and perhaps there's some yet-unknown natural animal host where that gets selected for. The point is that no genomic evidence can distinguish between these two cases, though.
For emphasis, it seems like you're assuming that we know all the natural viruses that the WIV was working with. Sampling of novel coronaviruses from nature was a core part of the WIV's research, so that's not a reasonable assumption. RaTG13 was sampled in 2013, but not fully published until 2020. At least one novel coronavirus was identified in contamination of rice samples sequenced on the same equipment that the WIV used:
https://www.biorxiv.org/content/10.1101/2023.02.12.528210v2
That's a merbecovirus, so it couldn't possibly have any relationship to SARS-CoV-2; but if they had one unpublished novel virus, then it's hard to reject the possibility that they had more.