So the "repo" in this case is a database, where currently the only things stored are denormalized source tree nodes. I could imagine extending the database to support arbitrary assets, probably also addressed by the hash of their contents (same as top-level language definitions are).
So I'm assuming your language will have some sort of custom source code management system? If so, what do you do when a user wants to store a non-code file together with the source code, e.g. how web applications might have CSS files, fonts and image assets in the repo?