IIRC JVM static-analysis libraries get around this by essentially forcefully pulling in and reflecting upon the particular compiler release's internals that are being built against. The result is "non-portable", but only in the sense that it's getting tailored to the particular compiler release that's already concretely available in the build environment.
Mind you, that's a bit different, because you don't usually ship the compiler parts of the JDK as part of your application JAR; while SQLite does ship this compiler as part of the library. Would be fine, though, as long as your executable's embedding SQLite statically (or in a Docker image, etc) — in other words, vendoring the particular version of SQLite that matches the version the application-layer codegen library was compiled against.