For instance, here is an 'Eaton' 3 phase breaker with integrated ground fault protection circuitry:
https://www.omnical.co/products/eaton/1742431/2259595
Note the little yellow 'test' button. That's a 30 mA fault current device, you can have higher permissible fault currents for certain gear that tends to be a bit more leaky which would otherwise cause nuisance trips. These little things are quite the work of art inside, if you ever have a faulty one I would encourage you to pick it apart to see what makes it tick.
GFCIs protect against current leaking to ground, by detecting if the current flowing on a hot and neutral leg are different. If they're different, the current must be going somewhere else: to ground, through you, etc. The GFCI breakers do this in the breaker, the outlets do it at the outlet. As someone else mentioned, you can also have other non-GFCI outlets chained to a GFCI outlet, so that upstream outlet is the one that pops if there's a fault.
TL;DR they detect and protect against different fault conditions.