A lot of these SaaS are just glorified Rails apps with a patina of professional "security" and "reliability", and loads of extra junk that your co will never use.
Maybe i'm wrong, but the impression I had of Jira is that just like using sharepoint for file storage, the C-level people want it because they were told that's what big enterprise are using. And if it doesn't fit the need of the company and everyone hates it, they just blame the employees or lack of training.
Many medium-large corporations have their own cloud environments that their IT Ops control. Solution providers can host Atlassian stacks on their own cloud environment where they are not affected by data privacy concerns (it's in their already green-lit cloud providers data center) so they can host it behind a firewall with only VPN access allowed. They can also do all the magic you can usually do with web software like put a frontend proxy in front of it, or use more flexible/legacy authentication methods. Not to mention that for example you could have a Jira Cloud that you would need to integrate with a SCM program. Jira data could be "OK" to live in the cloud but code would be a big no-no. These problems can be solved by having them all live behind the firewall.
A competent managed solution provider also has consultants that can train or instruct on usage. It costs but it is simpler and faster than having to go through the forums or send a support ticket for every small issue to Atlassian itself.
If it's some multi-tenant solution it's no better.
Experienced people hosting and tuning Atlassian products has a greater success rate than someone doing it alone for a large company. Almost every time I’ve migrated an old Atlassian installation under our wing it’s given me shock how users have been made to suffer the loading times and perfs that come from underprovisioning (db or actual machine) and messy configuration. I’m not blaming the former admins but it just happens. Usually end users are happy after we clean the mess up and everything feels snappy.
Disclosure: I’ve worked in this kind of expert role.