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A comment on Seq – A programming language for computational genomics and bioinformatics.

Re:Seq – A programming language for computational genomics a... by car on Wednesday September 15, 2021 @06:18AM (#28537355)
Looks great, will definitely give this a try since it does sequence manipulations that I otherwise have to write myself.

Will this be available via conda? And how would seq integreate with Snakemake, since that is also based on Python?

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Re:Seq – A programming language for computational genomics a... by tdido on Wednesday September 15, 2021 @06:36AM (#28537458)
Seems like there's a conda package in the works: https://github.com/bioconda/bioconda-recipes/pull/29660
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Re:Seq – A programming language for computational genomics a... by dunefox on Wednesday September 15, 2021 @10:29AM (#28539511)
BioJulia might be the better choice since it validates data and seq doesn't: https://biojulia.net/post/seq-lang/
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Re:Seq – A programming language for computational genomics a... by fwip on Thursday September 16, 2021 @05:01PM (#28557544)
Seq has since addressed many of the concerns raised by that post, including input validation.
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Re:Seq – A programming language for computational genomics a... by dunefox on Thursday September 16, 2021 @05:18PM (#28557759)
How's the performance?
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