The primary area you see this is with applications which have flagged that data as sensitive so it won't be included on unecrypted backups (which includes iCloud). This is somewhat important for security — for example, you reasonably do not want TOTP seeds floating around invalidating your second factor security model — but it means you have a problem if an application you care about uses that feature in a way you don't anticipate.
Also with a jailbreak, other people own your data too. A jailbreak is an exploit. A hammer can be used to drive in a nail (jailbreak) or it can be used to smash windows (malware.) Same tool in the end.
The very act of jailbreaking is what keeps your system vulnerable to the same exploits used by malicious actors.
Regarding data, all user data on iOS is backed up either through iCloud and/or on your Mac.
I'm not able to sideload iOS apps easily (apart from using AltStore), or downgrade apps at all. This becomes possible with a jailbreak.
Also, with a jailbreak, I own my data. iOS (Android too, I believe) actively prevents some data from being backed up or copied otherwise.