It's the nature of the beast.
Here it seems that the built-in feature to change the primary e-mail address of one of the biggest VoIP services in the world was never actually tested properly and breaks your account by default. It’s bizarre how broken Microsoft’s account system is.
I’m actually surprised I haven’t yet heard of people having their GH/MS accounts break in unexpected ways due to linking them.
As much as we like to think that Microsoft has infinite resources to re-write everything, they really don't. They have the same problems the rest of us have. Now I have to get back to figuring out why a half dozen users from our HR system are failing to import.
EDIT: Those users failed to import because the vendor changed an internal column name last week that is exposed in the export (and now it even has a typo). Ah, The joys of software development.
I had a very similar issue with Minecraft and Family accounts where the credit went to the wrong account. Microsoft just wouldn’t support this issue so I ended paying for something twice.
This is the nature of MS
It might seems obvious, but that seriously taught me something.
You know how Skype accounts got merged with Microsoft accounts way back? Well, that apparently broke the link as my Microsoft account and my Skype account now had separate e-mail addresses, so now silently a new Skype account was created (and I assume a new Microsoft account?)
The credit got added to the newly created account, so I now have two accounts to manage (one with credit and one with my Skype contacts).
I went through some similar ordeal twice before, once with Skype when they introduced the link and once with Azure (which rendered the account unusable, luckily I was just evaluating still). Both of those times I spent several hours spread over several days trying to resolve it with support, both times unsuccessfully. Truly Kafkaesque experiences.
This time I gave up after 30min and now have to juggle two Skype accounts until my credit runs out.
It's like no one ever considered that there can be exceptions to "the happy path".