That wasn't a design choice driven by reusability, originally SpaceX were aiming to recover the stage using parachutes. The original plan was a falcon with a cluster of 5 engines in a ring. Using a cluster of smaller engines was for two reasons. First because they didn't have the resources to develop a new larger engine. Second they wanted to mass produce the engines to get production efficiencies and a bigger run of smaller engines worked better for that.
It just worked out serendipitously that this lead to a design that was very well suited to adapting for propulsive landings. If they'd developed F5 first instead, they wouldn't have been able to land it because without a single centre engine they would need to use at least 2 engines to land, and the thrust would be way too high. Even with a design with a centre engine, the Merlin would be too powerful for the weight of an F5.
This isn't a criticism, it's just the way things worked out.
It's also often overlooked that a solution might not be the best fit for everyone. Just like it's best for the Falcon 9 to discard the second stage.