Opening / reading / writing files, parsing args, making HTTP requests, etc. which are extremely common scripting operations are easier with Python, and the end result tends to be much more succinct thanks to its syntax (this applies to all Python code compared to JavaScript, but I'd argue it's especially valuable in shorter scripts).
Edit: didn’t exist at the time!
Python is my go-to because I know the ecosystem well and can go from zero to done with minimal effort and research.
Node has since (come into existence) and matured, and while it may be better/faster in some situations now, I haven’t encountered a project that has compelled me to switch.
I suspect the answer to your question boils down to a combination of: familiarity, preference, individual productivity, and pragmatism.
This will likely shift over time.
But I guess the biggest differentiators are really the ecosystems and standard libraries. Node.js is certainly catching up, but Python has generally a better selection of high-quality libraries for tasks beyond the web.
What libraries or escape hatches to you actually use in your daily work that are exclusive to Python? The ones I'm familiar with would probably be OpenCV and the whole machine-learning family of libraries (sci-kit, spacy, tensorflow, etc).
IMO the opposite end of that particular scale is Perl.
Different tools are best for different jobs, for example if you need to run some basic NLP jobs pythons going to be much better.