Newspapers generally mark Opinion columns as Opinion. In the case of the NYT article, it's not marked Opinion, but you could reasonably infer it as opinion because it's written as a dialog between two people. However, it's not explicitly marked as opinion, which it should be in order to make it clear that this is just the reporters' opinions.
Meanwhile Greenwald states his Substack is where he's publishing as an independent journalist, so unless you want to start referring to him as an independent pundit (or entertainer, in the style of Fox News primetime), calls for journalistic integrity should absolutely apply equally there.
Also, accusing a man like Greenwald (who resigned from the media organisation that he founded because he disagreed with the direction it was taking) of poor integrity? That's a bit off-base.