Do you know if there's any standardization effort to support xdotool-like functionality over wayland with some kind of actual security model (using ydotool kind of subverts the security improvements wayland offers unless one does more due diligence than is pleasant to do for quick scripts)
However as far as I am aware there is no proper key-capture or key-inserting API in Wayland. There are hacks (IMHO) like bypassing the compositor and reading the events directly but we are still missing a well-defined API that is supported cross-compositor.
I am fine with GNOMEs very limited keyboard shortcut support but I definitely agree that this is a step down from what we had on X.
It is just like the web. By default websites don't get to access your camera, but that doesn't mean that camera access is impossible. They just added a way to request camera access with user permission.
Heck, you can even go a layer lower and simulate a keyboard event device, which would work with any window system, past, present and future. Even kmscon.
Autokey uses Xorg APIs for key handling. Of course this is not going to work on Wayland since it's written for Xorg and not for Wayland.
The author is probably the type of person that buys an AMD graphics card, and then complains that AMD "breaks" software that's based on CUDA...