Megafauna do get most of the attention, but a lot of the hidden economic / scientific benefits of maintaining biodiversity I think comes from smaller parts of the ecosystem -- for instance, drug discovery. Or, the widely used polymerase chain reaction (PCR) technique for copying DNA... which for all we know is a technique that might not even exist today had preservationists not had the foresight to preserve the Lower Geyser Basin of Yellowstone National Park, where the crucial enzymes for this technique were found.
Most of the worst environmental damage today is not happening in the highly developed west, it's happening in the rest of the world that - understandably - doesn't care as much about saving the local animals as it cares about catching up to the material standards of the wealthy world.
That statement is a tautology. "Some" species will flourish in all productive biomes, by definition. But the ecosystems that existed will be highly disrupted. So we're replacing large predator marine species with jellyfish. Beavers with rats, wolves with feral cats, etc... And the plant diversity is quite a bit more impacted.
Your point amounts to "well, all life isn't going extince, so what's your problem?". The problem is that there is moral value in preserving what exists. Some of us like to believe that "causing a mass extinction event due to entirely preventable causes" is, y'know, a bad thing.
Our living environments create opportunities for well-adapted species to flourish. This will certainly shift the makeup of our planet's biodiversity.
You mention all of this in passing, but I think these effects make the prognosis on biodiversity somewhat less than "very grim".