Same with the md5 complaint. That use of md5 wasn't a problem but there's a perfectly fine alternative and if you can ensure by automated tests that md5 is used nowhere, you also can guarantee that it's never used in a security relevant context.
You can automatically check for the string "md5" in identifiers, but you can't reliably automatically check for implementations of the MD5 algorithm. All it takes is for someone to copy-paste an implementation of MD5 and rename it to "MyChecksumAlgorithm" and suddenly very few (if any) security scanning tools are going to be smart enough to find it.
(Foolproof detection of what algorithms a program contains is equivalent to the halting problem and hence undecidable, although as with every other undecidable problem, there can exist fallible algorithms capable of solving some instances but not others.)
For the more common scenario of internal sites/services which are not accessible from the public Internet, but not fully isolated from it either:
You don't need the internal site exposed to the Internet. If you use DNS-01 ACME challenge, you just need to be able to inject TXT records into your DNS. Some DNS providers have a REST API which can make this easier.
Another option – to use HTTP-01 ACME challenge, you do need the internal host name to be publicly accessible over HTTP, but that doesn't mean the real internal service has to be. You could simply have your load balancer/DNS set up so external traffic to STAR.internal.example.com:80 gets sent to certservice.example.com which serves up the HTTP-01 challenge for that name. Whereas, internal users going to STAR.internal.mycompany.com talk to the real internal service. (There are various ways to implement this – split horizon DNS, some places have separate external and internal load balancers that can be configured differently, etc)
Yet another option is to use ACME with wildcard certs (which needs DNS-01 challenge). Get a cert via ACME for STAR.internal.medallia.com and then all internal services use that. That is potentially less secure, in that lots of internal services may all end up using the same private key. One approach is that the public wildcard cert is on a load balancer, and then that load balancer talks to internal services – end-to-end TLS can be provided by an internal CA, and you have to put the internal CA cert in the trust store of your various components, but at least you don't have the added hassle of having to put it in your internal user's browser/OS trust stores.
(In above, for STAR read an asterisk – HN wants to interpret asterisks as formatting and I don't know how to escape them.)
So I guess an internet-connected system grabs the certificates, then they get burned to DVD-R, then... a robot moves the DVD-R to the internal network? It's not easy. It's all much worse if the networks aren't physically adjacent. One could be behind a bunch of armed guards and interlocking doors.