That unfairly harms the consumer, which is the basis for this Anti-Trust argument.
Effectively, Amazon has built the world's largest Marketplace by losing billions and billions for years and years, turned said Marketplace into an almost necessity to sell on, decided it will also sell on said Marketplace often at unfair prices below manufacturing cost of the goods, and now has made their own Logistics Network an effective requirement for selling on the very same Marketplace.
In my case, this wasn't a problem. I chose to get into the market specifically to sell FBA. As such, I knew cheap items were not viable for FBA, so I didn't sell cheap items on it.
That minimum commission fee is the reason you don't see anything on Amazon for below $6 (unless there's some weird accounting going on for the seller). Above $6, the fee turns into a percentage and is easier to manage.
That fee is also the reason you'll often see packs of 3 or some item when you only want 1... it's just not profitable to sell the 1 at a reasonable price anymore.
As an aside, the SNL program doesn't get all the same benefits as FBA. In some cases you don't get the Prime badge, and in other cases you're an "Add-on Item" to get free shipping for the buyer.