For new designs: basically just use libsodium.

For SSH: Ed25519 or 2048 bit RSA.

We can get into the weeds about which specific cryptographic primitives are fine in isolation, but that misses the point — the ones that were fine 5-10 years ago are still more or less fine — the problems for developers and end-users generally stem from accidental misuse of cryptographic primitives in designing systems incorporating cryptographic primitives as a component. Sure, don't use DES, DSA, or MD5/SHA1; strong primitives are only necessary, not sufficient.