Second, the systems discussed pull information from student's phones and directly monitor communication using school email addresses. The former is an issue for obvious reasons and the latter is an issue because you actually should have a reasonable expectation of private communication through mail.
The fact that it is possible for the school to read your mail is immaterial. It is possible for the government to read your mail. The government does not get to do so, despite the many, many crimes committed through the mail and by people that receive mail.
But I don't know of anywhere that provides you a computer, email address, whatever, without language saying they are for approved use only and can be monitored. From what I read the 'pulling information' was after a device was connected to a computer, most likely caused by school administrators and students not understanding how the system reacts when it sees a new drive attached. This isn't invading kids deepest darkest secrets, like asking them to accept a cacert or whatever.
Anyway, as I see it first we should agree on what exactly the problem is; in this case, it appears this was created to solve the problem of mass shootings in schools.
If that is the problem, this solution goes well beyond what is necessary to solve it. Further, it remains to be seen whether this solution actually works to solve the problem at all.
So you have something that might work but definitely does a bunch of unnecessary things. At best, you have an incredibly inefficient solution and at worst something that actively harms people.