Basic repairs, emergencies, etc can't require a full service stop across the line. There are solutions used in similar situations that are baseline operational requirements.
https://www.nolo.com/legal-encyclopedia/tarmac-delays-airlin...
Even back in the day when it did happen, it was because of policy, not physical constraints.
Airplanes are not comfortable at all, and no hyperloop pods actually exist - that statement makes no sense.
(But this is another good point: a failed hyperloop also won't have A/C. That will be a potentially life-threatening problem in Dubai, where the first hyperloop is likely to be built. Summer temperatures there regularly reach 45C.)
Why can't a failed hyperloop have A/C?
So first, commercial aircraft typically start their engines immediately upon leaving the gate. An extended period of time without A/C is extremely rare, and nowadays regulations require A/C for any tarmac delay over an hour.
Second, the reason you can't have A/C in a failed hyperloop is that there's nowhere to discharge the heat. As long as the pods are moving you can discharge heat into the tube (because it's not a hard vacuum) but as soon as they stop you can't do that any more.
Though actually this raises another question in my mind. How do spacecraft handle heat? Or is the problem with spacecraft keeping them warm enough, rather than dealing with excess heat?
Radiating heat to the tube won't work because the tube is either above ground, in which case it's likely to be much hotter than ambient if the sun is up, or underground, in which case you've effectively wrapped the tube in a nice insulating blanket of dirt, and again there is no place for the heat to go.
Maybe the focus should be on how to get people out of a broken-down pod within a reasonable period of time rather than cooling said broken-down pod. Unfortunately I don't have any ideas on this front.