When Z3 first came out, I built a machine model for a subset of ARMv7 and ran into a few cases that confused Z3, but worked fine in an equivalent MiniSat. However, this was years ago, and it appears -- although I have not verified this -- that the code in Z3 that I narrowed down in preparation to filing a bug report has already been fixed. The machine model has succumbed to bit rot; I abandoned the effort for a model I built on top of Coq. But, it would be interesting to attempt to fire it up again to see if it works now, and if so, use that to perform a binary search to find out when the fix was applied.
It shouldn't be hard to create an example where two model checkers differ. Check current bug reports for two model checkers, and build a model that exploits the bug in one model checker but in which the other model checker works. These code bases are complex. They are increasingly infrequent, as the developers working on these model checkers are quite diligent, but subtle errors do exist.
So it's possible for mainstream SAT solvers to have errors, but I imagine their default configurations are very thoroughly tested.
But yes it is strange that it doesn't verify its outputs. On the other hand SAT solvers want to be as fast as possible and there shouldn't be a need to do it if the solver is operating correctly.