News for hackers. Stuff that matters.
Re:The Nobel Prize in Chemistry 2017 by indescions_2017 on Wednesday October 04, 2017 @09:08AM (#15400171)
Congrats! Cryo-EM is the tool that basically gave birth to integrative structural biology. Our understanding of how viruses attach to healthy cells, or how blastocysts differentiate into stem cells is all contingent upon our ability to observe these processes in vivo. And as we push ever further down into the atomic scale, using better electron detectors and more intelligent Bayesian estimations, many hidden mysteries of cell functioning will soon be revealed.

For example, seeing the structure and attack vector of the Plasmodium falciparum parasite that causes severe malaria has led to the design for an inhibitor.

The cryo-EM structure of the Plasmodium falciparum 20S proteasome and its use in the fight against malaria.

https://www.ncbi.nlm.nih.gov/pubmed/27286897

Hexahydroquinolines are antimalarial candidates with potent blood-stage and transmission-blocking activity

https://www.nature.com/articles/s41564-017-0007-4

Re:The Nobel Prize in Chemistry 2017 by aswanson on Wednesday October 04, 2017 @12:58PM (#15401914)
What are some good introductory texts/resources to read to get up to your level of understanding in these topics? Is this a biochem, virology, molecular bio area of study?
Re:The Nobel Prize in Chemistry 2017 by indescions_2017 on Wednesday October 04, 2017 @05:48PM (#15405014)
Invaluable for understanding the Central Dogma of molecular biochemistry:

https://www.edx.org/course/introduction-biology-secret-life-...

Followed by a daily diet of Nature, Cell, & Science

Re:The Nobel Prize in Chemistry 2017 by aswanson on Wednesday October 04, 2017 @06:24PM (#15405262)
Much obliged.
Re:The Nobel Prize in Chemistry 2017 by coldcode on Wednesday October 04, 2017 @08:17AM (#15399907)
As a former chemistry student from way back, this is awesome stuff that was science-fiction back then. Imaging chemical reactions in mid-flight is one of those things people have always wanted.
Re:The Nobel Prize in Chemistry 2017 by selimthegrim on Wednesday October 04, 2017 @10:52AM (#15400849)
Wasn't that done by Herschbach and Lee with molecular beams?
Re:The Nobel Prize in Chemistry 2017 by simonbyrne on Wednesday October 04, 2017 @01:23PM (#15402153)
The computational problem for solving Cryo-EM structures is an interesting one. The current state-of-the-art approach is essentially an EM algorithm for classifying and estimating the orientations of the images, but it utilises a fairly brute-force approach (and thus quite computationally expensive). There is probably a lot of room here for further improvements, such as better or faster approximations, or using different statistical/machine learning approaches, as well as incorporating more chemical/structural knowledge into the process.

The software I'm most familiar with is relion, which is open source: https://github.com/3dem/relion

Re:The Nobel Prize in Chemistry 2017 by kanzure on Wednesday October 04, 2017 @06:56AM (#15399559)
just the other day i was looking at this cryo-EM playlist, seems relevant now: https://www.youtube.com/playlist?list=PL8_xPU5epJdctoHdQjpfH...
Re:The Nobel Prize in Chemistry 2017 by Teichopsia on Wednesday October 04, 2017 @12:44PM (#15401785)
A bit off topic. Say, 5-10 years ago I read about someone winning a nobel prize for something he did regarding blood. When he was asked in the interview how he came about the discovery, he replied having imagined himself as that particular "compound" traveling through the blood stream while on Acid. Later on I tried searching for that to see who it was but couldn't find it. Now I wonder if it's true.
Re:The Nobel Prize in Chemistry 2017 by aheilbut on Wednesday October 04, 2017 @12:53PM (#15401865)
Are you thinking of Kary Mullis?
Re:The Nobel Prize in Chemistry 2017 by Teichopsia on Wednesday October 04, 2017 @01:13PM (#15402056)
Now I am. Thanks!
Re:The Nobel Prize in Chemistry 2017 by resiros on Wednesday October 04, 2017 @09:12AM (#15400196)
This is the second nobel price in five years going to protein structure prediction. Pretty exciting stuff!
Re:The Nobel Prize in Chemistry 2017 by fabian2k on Wednesday October 04, 2017 @09:21AM (#15400234)
This is not prediction, it's structure determination. Though there is a lot of computation and modelling involved, it's much more like X-ray crystallography and NMR than ab initio structure prediction. It's based on actual, measured data, not on computation alone.

It is very impressive that they managed to get the resolution of the method into a range comparable to the other conventional methods.

Re:The Nobel Prize in Chemistry 2017 by evolve2017 on Wednesday October 04, 2017 @08:43AM (#15400022)
I wonder if this means that the super resolution microscopy techniques are also in line for a Nobel...
Re:The Nobel Prize in Chemistry 2017 by dbcooper on Wednesday October 04, 2017 @08:55AM (#15400085)
Re:The Nobel Prize in Chemistry 2017 by dnautics on Wednesday October 04, 2017 @08:54AM (#15400082)
2014 chemistry.